Showing 264 open source projects for "command line"

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  • 1
    Luminance HDR

    Luminance HDR

    Complete solution for HDR photography

    Luminance HDR is a complete suite for HDR imaging workflow. It provides a wide range of functionalities, during both the fusion stage and the tonemapping stage. Its graphical user interface, based on Qt5, runs on a variety of platforms, such as Microsoft Windows, Mac OS X 10.9 and later and several Unix flavors (Linux, FreeBSD and others). Input images can be supplied in multiple formats, from JPEG to RAW files. In the same way, output can be saved in many different formats as well, from...
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    Downloads: 266 This Week
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  • 2
    MyCAT

    MyCAT

    Active, high-performance open source database middleware

    MyCAT is an Open-Source software, “a large database cluster” oriented to enterprises. MyCAT is an enforced database which is a replacement for MySQL and supports transaction and ACID. Regarded as MySQL cluster of enterprise database, MyCAT can take the place of expensive Oracle cluster. MyCAT is also a new type of database, which seems like a SQL Server integrated with the memory cache technology, NoSQL technology and HDFS big data. And as a new modern enterprise database product, MyCAT is...
    Downloads: 4 This Week
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  • 3
    Data Science at the Command Line

    Data Science at the Command Line

    Data science at the command line

    Command Line by Jeroen Janssens, published by O’Reilly Media in October 2021. Obtain, scrub, explore, and model data with Unix Power Tools. This repository contains the full text, data, and scripts used in the second edition of the book Data Science at the Command Line by Jeroen Janssens. This thoroughly revised guide demonstrates how the flexibility of the command line can help you become a more efficient and productive data scientist. ...
    Downloads: 1 This Week
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  • 4

    Spectral Python

    A python module for hyperspectral image processing

    Spectral Python (SPy) is a python package for reading, viewing, manipulating, and classifying hyperspectral image (HSI) data. SPy includes functions for clustering, dimensionality reduction, supervised classification, and more.
    Downloads: 0 This Week
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  • 5
    assetfinder

    assetfinder

    Find domains and subdomains related to a given domain

    assetfinder is a reconnaissance tool designed to discover domains and subdomains associated with a target domain by aggregating data from multiple public sources. It queries services such as certificate transparency logs, threat intelligence platforms, and passive DNS providers to build a comprehensive list of related assets. The tool is widely used in bug bounty programs and penetration testing to map an organization’s external attack surface. It supports optional filtering to return only...
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  • 6
    The OpenGEREA is a open enrichment analysis framework for gene expression regulation data analysis.
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  • 7

    TSA_CRAFT

    Automatic command line tool for TSA data analysis

    DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily...
    Downloads: 3 This Week
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  • 8
    Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
    Downloads: 0 This Week
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  • 9
    md2googleslides

    md2googleslides

    Generate Google Slides from markdown

    Generate Google Slides from markdown & HTML. Run from the command line or embed in another application. This project was developed as an example of how to use the Slides API. While it does not yet produce stunningly beautiful decks, you are encouraged to use this tool for quickly prototyping presentations. The first time the command is run you will be prompted for authorization. OAuth token credentials are stored locally in a file named ~/.md2googleslides/credentials.json. ...
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  • 10
    julia-vim

    julia-vim

    Vim support for Julia.

    ...This plug-in adds some functionality to substitute LaTeX code sequences (e.g. \alpha) with corresponding Unicode symbols (e.g. α). By default, these substitutions must be triggered explicitly by pressing the Tab key, as in the Julia command line (the REPL); however, an automatic, as-you-type mode can also be activated, and a method based on keymap is also available. This feature also works in command mode, e.g. when searching the files with the / or ? commands, but the as-you-type mode is not available (the keymap-based version works though, and it also works with some Vim commands like f and t). ...
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  • 11
    SIVIC
    SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
    Downloads: 11 This Week
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  • 12
    DocOpt.jl

    DocOpt.jl

    Command line arguments parser

    DocOpt.jl is a port of docopt written in the Julia language. docopt generates a command-line arguments parser from human-readable usage patterns. The DocOpt module exports just one function, docopt, which takes multiple arguments but all of them except the first one are optional.
    Downloads: 0 This Week
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  • 13
    MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
    Downloads: 0 This Week
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  • 14

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems....
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  • 15
    The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.
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    Downloads: 414 This Week
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  • 16

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a...
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  • 17
    scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
    Downloads: 2 This Week
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  • 18
    xsv

    xsv

    A fast CSV command line toolkit written in Rust

    xsv is a command line program for indexing, slicing, analyzing, splitting and joining CSV files. Commands should be simple, fast and composable. Simple tasks should be easy. Performance trade offs should be exposed in the CLI interface. Composition should not come at the expense of performance. Let's say you're playing with some of the data from the Data Science Toolkit, which contains several CSV files.
    Downloads: 0 This Week
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  • 19
    Sagacity

    Sagacity

    Security Assessment Data Management and Analysis Tool

    We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow...
    Downloads: 0 This Week
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  • 20
    As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
    Downloads: 2 This Week
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  • 21
    Lata is a file format to store CFD results, with special care for huge datasets. This project provides tools for manipulate and convert the lata files. This project is part of the VisIt plugin reader. The Snorky3D sofware is presented in the following conference communication: Visualisation of CFD computations: millions of particles in real time with Snorky3D Visu 2012, september 2012, Paris, France http://visu2012.imag.fr/articles/mathieu.pdf
    Downloads: 0 This Week
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  • 22
    JPIV

    JPIV

    Particle Image Velocimetry

    JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/
    Downloads: 0 This Week
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  • 23

    MDPP

    The Biozentrum Micrograph Data Processing Program (MDPP)

    MDPP is an image processing package designed for micrograph data. It contains program to process data in a number of ways including many averaging methods, statistical methods and reconstruction schemes. The programs are not limited to micrograph data of course, but can be applied to images of all types.
    Downloads: 0 This Week
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  • 24
    FractalNow

    FractalNow

    Fast, advanced, multi-platform fractal generator

    FractalNow provides users with tools to generate pictures of various types of fractals quickly and easily. It is made of both a command line tool, FractalNow, and a graphical tool, QFractalNow. The graphical tool, based on Qt library, allows users to explore fractals intuitively and generate pictures. Both tools are entirely multi-threaded and implement advanced algorithms and heuristics that make computation very fast compared to most existing free fractal generators.
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    Downloads: 18 This Week
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  • 25
    SBML2LaTeX

    SBML2LaTeX

    A documentation and report generator for systems biological models

    ...A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose of SBML2LATEX is to provide a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication.
    Downloads: 0 This Week
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