Search Results for "read" - Page 2
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Showing 92 open source projects for "read"
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GDS3D
Interactive 3D Layout Viewer for GDSII
GDS3D is a cross-platform 3D hardware accelerated viewer for chip layouts. Read standalone GDS files or use the Cadence plugin for easy integration with your Virtuoso environment. Developed by PhDs of the IC-Design Group, University of Twente, The Netherlands The GDS3D project is also hosted on Github: https://github.com/icdut24/GDS3D, but currently not actively maintained by us. Forks can be found at https://github.com/trilomix/GDS3D and https://github.com/skuep/GDS3D -
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Bayesian Julia
Bayesian Statistics using Julia and Turing
Bayesian statistics is an approach to inferential statistics based on Bayes' theorem, where available knowledge about parameters in a statistical model is updated with the information in observed data. The background knowledge is expressed as a prior distribution and combined with observational data in the form of a likelihood function to determine the posterior distribution. The posterior can also be used for making predictions about future events. Bayesian statistics is a departure from... -
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Transporter
Sync data between persistence engines, like ETL only not stodgy
...You're encouraged to still use v0.5.2 for non mongo/postgres migrations. Transporter allows the user to configure a number of data adaptors as sources or sinks. These can be databases, files or other resources. Data is read from the sources, converted into a message format, and then send down to the sink where the message is converted into a writable format for its destination. The user can also create data transformations in JavaScript which can sit between the source and sink and manipulate or filter the message flow. Adaptors may be able to track changes as they happen in source data. ... -
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WAV.jl
Julia package for working with WAV files
This is a Julia package to read and write the WAV audio file format. WAV provides wavread, wavwrite and wavappend functions to read, write, and append to WAV files. The function wavplay provides simple audio playback. These functions behave similarly to the former MATLAB functions of the same name. -
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Feather.jl
Read and write feather files in pure Julia
Feather.jl provides a pure Julia library for reading and writing feather-formatted binary files, an efficient on-disk representation of a DataFrame. -
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LogicalSets
Integrated Comprehensive Data Architecture & Methodology
This is an advanced data architecture and methodology. A comprehensive Enterprise Resource Management System. A re-usable database with rules for customization, While being a data driven transaction processing engine, this system has very advanced reporting capabilities. This design eliminates up to 90% of business logic due to the way the data is structured. Uses a concept called Table Sets. Has a compound key that tells the programmer what tableset, which record which applet... -
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ADaMSoft
Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats. -
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Hedgehog Lab
Run, compile and execute JavaScript for Scientific Computing
Hedgehog Lab is an open-source scientific computation tool in the browser. Before the development, Pleases make sure you are already installed and enabled the yarn. Once cloned, switch to the dev branch and navigate to the folder by typing cd hedgehog-lab and then running the provided commands. On each run the program compiles and it takes time. Please wait until it shows "Compiled successfully!" and instructions about with which IP:PORT to connect. -
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cdfread is a program for people wirking with mass spectrometry datasets. cdfread implements the routines to read mass spectra and mass chromatograms from data files in netCDF ("Andi-MS") format. Centroid and profile data are supported.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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TensorBase
TensorBase is a new big data warehousing with modern efforts
TensorBase hopes the open source not become a copy game. TensorBase has a clear-cut opposition to fork communities, repeat wheels, or hack traffic for so-called reputations (like Github stars). After thoughts, we decided to temporarily leave the general data warehousing field. For people who want to learn how a database system can be built up, or how to apply modern Rust to the high-performance field, or embed a lightweight data analysis system into your own big one. You can still try, ask... -
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Talend Spatial Module (aka Spatial Data Integrator or SDI) is an ETL tool for geospatial. Based on Talend Open Studio, input, output and transform geocomponents are available. IO components read/write GIS formats(eg.PostGIS, GeoRSS). Transformers all
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DEPRECATED - KVFinder
Cavity Detection PyMOL plugin
...Please read and cite the original paper pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science (10.1186/s12859-021-04519-4). -
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SageMaker Containers
Create SageMaker-compatible Docker containers
Amazon SageMaker is a fully managed service for data science and machine learning (ML) workflows. You can use Amazon SageMaker to simplify the process of building, training, and deploying ML models. To train a model, you can include your training script and dependencies in a Docker container that runs your training code. A container provides an effectively isolated environment, ensuring a consistent runtime and reliable training process. The SageMaker Training Toolkit can be easily added to... -
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wzd
Powerful storage server, designed for big data storage systems
wZD is a server written in Go language that uses a modified version of the BoltDB database as a backend for saving and distributing any number of small and large files, NoSQL keys/values, in a compact form inside micro Bolt databases (archives), with distribution of files and values in BoltDB databases depending on the number of directories or subdirectories and the general structure of the directories. Using wZD can permanently solve the problem of a large number of files on any POSIX... -
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Feather
Binary data frame storage for Python, R, and more
Feather is a fast, interoperable binary data frame storage format designed for efficient data exchange between analysis tools. It provides columnar serialization for data frames, making read and write operations faster than many text-based formats. The project was built to make sharing data across languages such as Python and R easier. Feather is powered by the Apache Arrow columnar memory specification, which helps it represent numeric, string, categorical, date, timestamp, boolean, and binary data efficiently. It also supports null and missing values across column types. ... -
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Gio.js
A declarative 3D globe data visualization library built with Three.js
Gio.js is an open source library for web 3D globe data visualization built with Three.js. What makes Gio.js different is that it is simple to use Gio.js to customize a 3D data visualization model in a declarative way, add your own data, and integrate it into your own modern web application. Gio.js is an open source library for web 3D globe data visualization built with Three.js. What makes Gio.js different is that it is simple to use Gio.js to customize a 3D data visualization model in a... -
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TaBS-Pipe
Targeted Bisulfite Sequencing Data Analysis Pipeline v1.0.2
...TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are: -Bisulfite mapping and methylation calling in one single step -Supports single-end read alignments -Alignment seed length, number of mismatches etc. are adjustable -The output gives heatmap with categories. -
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Toxmatch
Exploring chemical similarity
Toxmatch is a flexible and user-friendly open-source software application that encodes several chemical similarity indices to facilitate the grouping of chemicals into categories and read-across. The core functionalities include the ability to compare datasets based on various structural and descriptor-based similarity indices as well as the means to calculate pair wise similarity between compounds or aggregated similarity of a compound to a set. -
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HSRA
Hadoop spliced read aligner for RNA-seq data
...This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs. -
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Reworm
The simplest way to manage state
...It lets developers create state with a simple create function and expose it through a shared Provider. The library focuses on direct access patterns, so components can read values with get and update them with set. It also supports selectors, which help reuse derived state logic across an application. Developers can subscribe to state changes when they need side effects or external synchronization. reworm is best suited for lightweight React projects or legacy codebases that want a simpler alternative to heavier state management patterns. -
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Cosmos DB Spark
Apache Spark Connector for Azure Cosmos DB
Azure Cosmos DB Spark is the official connector for Azure CosmosDB and Apache Spark. The connector allows you to easily read to and write from Azure Cosmos DB via Apache Spark DataFrames in Python and Scala. It also allows you to easily create a lambda architecture for batch-processing, stream-processing, and a serving layer while being globally replicated and minimizing the latency involved in working with big data. -
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xsv
A fast CSV command line toolkit written in Rust
xsv is a command line program for indexing, slicing, analyzing, splitting and joining CSV files. Commands should be simple, fast and composable. Simple tasks should be easy. Performance trade offs should be exposed in the CLI interface. Composition should not come at the expense of performance. Let's say you're playing with some of the data from the Data Science Toolkit, which contains several CSV files. Maybe you're interested in the population counts of each city in the world. So grab the... -
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SBML2LaTeX
A documentation and report generator for systems biological models
...SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose of SBML2LATEX is to provide a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication. -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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X-SOCS
X-ray Strain Orientation Calculation Software
...Chahine), follow the instruction in the following link: https://gitlab.esrf.fr/kmap/xsocs You can find on youtube video tutorials explaining the main steps to follow for a standard KMAP data analysis. In the folder XSOCS_tutorials_data of the Files tab, you can download the dataset used in the tutorials. Make sure to read the readme file.
