Search Results for "format"
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Showing 52 open source projects for "format"
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Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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Logstash
Centralize, transform and stash your data
Logstash is a server-side data processing pipeline that dynamically ingests data from numerous sources, transforms it, and ships it to your favorite “stash” regardless of format or complexity. It supports and ingests data of all shapes, sizes and sources, dynamically transforms and prepares this data, and transports it to the output of your choice. Logstash is extensible, with over 200 plugins available to let you create and configure your pipeline how you choose. -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
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JaxoDraw
JaxoDraw: Feynman Diagrams made easy!
JaxoDraw is a tool to generate Feynman diagrams in a mouse click-and-drag fashion. Graphs can be exported to a variety of graphics formats and arbitrary latex code can be used for labels to produce high-quality publishing-style figures. -
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Parkiet
Parquet format file GUI editor
Parquet file viewer and editor written in Java and SWT. It uses Apache Avro library for reading and writing edited parquet files. Only Parquet files with simple data type columns are supported. -
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123VCF
An Intuitive and Efficient Tool for VCF file filtration
123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand. It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC... -
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Metl ETL Data Integration
Simple message-based, web-based ETL integration
Metl is a simple, web-based ETL tool that allows for data integrations including database, files, messaging, and web services. Supports RDBMS, SOAP, HTTP, FTP, SFTP, XML, FIXLEN, CSV, JSON, ZIP, and more. Metl implements scheduled integration tasks without the need for custom coding or heavy infrastructure. It can be deployed in the cloud or in an internal data center, and it was built to allow developers to extend it with custom components. -
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Open Source Data Quality and Profiling
World's first open source data quality & data preparation project
This project is dedicated to open source data quality and data preparation solutions. Data Quality includes profiling, filtering, governance, similarity check, data enrichment alteration, real time alerting, basket analysis, bubble chart Warehouse validation, single customer view etc. defined by Strategy. This tool is developing high performance integrated data management platform which will seamlessly do Data Integration, Data Profiling, Data Quality, Data Preparation, Dummy Data... -
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Crystalsim - XRD hkl simulation
X-ray diffraction (XRD) analysis for hkl simulation of any crystal.
...Crystalline lattice parameters such as ‘a’, ‘b’, ‘c’ as well as interfacial angles such as alpha, beta, gamma can also be entered manually. Processed data can be saved as .csv file format. Designed by M Kanagasabapathy, Associate Professor, Department of Chemistry, Rajus' College, Affiliated to Madurai Kamaraj University Rajapalayam (TN) India email: rrcmks(at)gmail.com -
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NOVA
Analysis and visualization of complexome profiling data.
...Several hierarchical clustering algorithms (e.g., single linkage, average linkage, Wards linkage), different distance measures (e.g., Euclidean distance, Manhattan distance, Pearson distance), and various normalization techniques are implemented. Many additional functions like zooming, searching for proteins, image export, and automatic file format recognition support intuitive handling for biologists. Giese, et al. NOVA: a software to analyze complexome profiling data. Bioinformatics, 2015, 31(3): 440-441 -
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SBML2LaTeX
A documentation and report generator for systems biological models
SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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Sample Tracking
Rediscover the Simplicity http://www.atgclabs.com/
...FWA can track all of your research, development and process scale-up data in a single data storage platform, providing a organized and time effective means of keeping inventory and tracking samples on a large scale, while integrating sample storage and data storage on one easy-to-use format, minimizing confusion and increasing overall efficiency. With FWA, storage of samples is simple and systematic by entering them into the program according to their physical arrangements we create virtual containers matching these configurations and dimensions. -
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Informatica ExecuteWorkflow
A utility that uses Informatica Operations API
...If you pass in a parameter file and individual parameters on the command line, a temporary parameter file is created that has the values from the parameter file and appends the individual parameters. The e-mail sent is in HTML format using tables and looks similar to the workflow monitor output. -
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GeoKettle is a powerful, metadata-driven spatial ETL (Extract, Transform and Load) tool dedicated to the integration of different data sources for building and updating geospatial databases, data warehouses and services.
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Pentaho Data Integration
Pentaho Data Integration ( ETL ) a.k.a Kettle
...Core implementation, database dialog, user interface, PDI engine, PDI engine extensions, PDI core plugins, and integration tests. Maven, version 3+, and Java JDK 1.8 are requisites. Use of the Pentaho checkstyle format (via mvn checkstyle:check and reviewing the report) and developing working Unit Tests helps to ensure that pull requests for bugs and improvements are processed quickly. In addition to the unit tests, there are integration tests that test cross-module operation. -
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SyntheticWSI
Tools to generate and visualize artificial whole slide images
...Collection of tools to help generate artificial Whole Slide Images (WSIs). A WSI is stored as a ZIP archive of JPG tiles, and this software contains a tool to visualize this format. SVS files can be used directly for texture extraction (thanks to the included Bio-Formats library). Main source files in package fr.unistra.wsi.synthetic. -
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...The scripting language uses elements of the Regular Expression and xPath syntax. The webStraktor scripting language has a small instruction set and its syntax is easy to master. The standard webStraktor output format is XML based, either in ASCII, UTF-8 or ISO-8859-1 (Latin1) code pages. webStraktor relies on the Apache HttpClient for retrieving content via the HTTP protocol. It adheres to the Robots Exclusion Protocol and it can be configured to operate in an anonymous way by connecting to the predominant types of web proxy servers. webStraktor extends the functionality of web crawlers, spiders or bots by integrating scraping and crawling capabilities.
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HW SOM
SOM - Self-Organizing Maps of Teuvo Kohonen
It's a "Hello World" implementation of SOM (Self-Organizing Map) of Teuvo Kohonen, otherwise called as the Kohonen map or Kohonen artificial neural networks. -
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EasyDataQuality for Pentaho Kettle
EasyDataQuality for Pentaho Data Integration in Kettle
EasyDQ plugins for Contact cleansing in Pentaho Data Integration in Kettle. -
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graphICs
graphICs is a converter transforming GDS II-data to Asymptote-code
...It reads a stream of GDS II-records, optimizes it by removing objects smaller than a user-defined minimal size an writes it to Asymptote-code. This code can be translated via Asymptote to PDF, PNG or other formats. The output can be specified to be printed on an A-format paper, portrait or landscape, top/right, center or bottom/left align. To use graphICs you need to download the JAR-file containing the program (no installation needed) and the MAP-file containing the color-information for the design (you can modify it or you create your own). To create graphic or PDF-files you need to download Asymptote from asymptote.sourceforge.net. ... -
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Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.
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MLPlot is a lightweight plotting library written in Java. It produces vector graphics in the SVG format but can also save EPS, JPG, PNG,..(if convert and inkscape are installed). The goal is to imitate MATLAB's 2D plotting functionality.
