Showing 9 open source projects for "cp/m"

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  • 1
    123VCF

    123VCF

    An Intuitive and Efficient Tool for VCF file filtration

    ...It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran
    Downloads: 4 This Week
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  • 2
    Crystalsim -  XRD hkl simulation

    Crystalsim - XRD hkl simulation

    X-ray diffraction (XRD) analysis for hkl simulation of any crystal.

    ...Crystalline lattice parameters such as ‘a’, ‘b’, ‘c’ as well as interfacial angles such as alpha, beta, gamma can also be entered manually. Processed data can be saved as .csv file format. Designed by M Kanagasabapathy, Associate Professor, Department of Chemistry, Rajus' College, Affiliated to Madurai Kamaraj University Rajapalayam (TN) India email: rrcmks(at)gmail.com
    Downloads: 9 This Week
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  • 3
    apache spark data pipeline osDQ

    apache spark data pipeline osDQ

    osDQ dedicated to create apache spark based data pipeline using JSON

    ...This uses java API of apache spark. It can run in local mode also. Get json example at https://github.com/arrahtech/osdq-spark How to run Unzip the zip file Windows : java -cp .\lib\*;osdq-spark-0.0.1.jar org.arrah.framework.spark.run.TransformRunner -c .\example\samplerun.json Mac UNIX java -cp ./lib/*:./osdq-spark-0.0.1.jar org.arrah.framework.spark.run.TransformRunner -c ./example/samplerun.json For those on windows, you need to have hadoop distribtion unzipped on local drive and HADOOP_HOME set. ...
    Downloads: 0 This Week
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  • 4
    EntOpt Layout

    EntOpt Layout

    Relative entropy optimization network layout plugin

    The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.
    Downloads: 0 This Week
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  • 5
    SignalDiagrams

    SignalDiagrams

    Digital/Analog signals visualization tool

    A JavaFx 8 educational application that will let you visualize digital and analog signals from a binary input and let you export the chart in SVG (Everything is in progress). Digital: Bipolar, CMI, NRZ-L, NRZ-M, NRZ-S, Manchester, Manchester differential, Miller, MLT-3, pseudoternary, RZ, Unipolar. Analog: Phase, Frequency, Amplitude.
    Downloads: 0 This Week
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  • 6

    PerformNet

    Queue network modelization tool

    ...L’équipe était composée de : Philippe Olivier, François Lemonnier-Lalonde, Dominique Tremblay et François Moreau. Le projet a été réalisé pour le cours de Génie logiciel orienté objet, donné par M. Jonathan Gaudreault à l'Université Laval. Le projet consistait à développer un logiciel de modélisation de réseau de files d’attente, aussi appelé un réseau de Jackson. Chaque nœud du réspeau représente une station de traitement et chaque arc orienté représente un chemin possible d’une station à une autre. Le réseau possède toujours un point d’arrivée et de sortie. ...
    Downloads: 2 This Week
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  • 7

    Galois sub-hierarchy builder

    Visualize Galois sub-hierarchy of 2d matrix

    ...The algorithm for calculating GSH is called Pluton and the present Java realization is based on two articles. "Efficiently computing a linear extension of the sub-hierarchy of a Concept Lattice" by Anne Berry, Marianne Huchard, Ross M. McConnell, Alain Sigayret and Jeremy P. Spinrad. "Performances of Galois Sub-hierarchy-building algorithms" by Gabriela Arevalo, Anne Berry, Marianne Huchard, Guillaume Perrot and Alain Sigayret In you're in need of other GSH algorithms or their realizations in C++, you might want to investigate a project called Galicia on sourceforge. ...
    Downloads: 0 This Week
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  • 8
    Daffodil Replicator is a powerful Open Source Java tool for data integration, data migration and data protection in real time. It allows bi-directional data replication and synchronization between homogeneous / heterogeneous databases including Oracle, M
    Downloads: 1 This Week
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  • 9
    Software Development Toolkit and Libraries to support the adoption of MIMOSA and Open O&M Initiatives. The libraries and toolkits will focus on basic implementation of DAO, XML, and Web Service tools.
    Downloads: 0 This Week
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