Search Results for "data analysis" - Page 15
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Showing 1010 open source projects for "data analysis"
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decd
R package for complex disease analysis
This is a R packages designed for complex disease when large scale expression data is available -
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SemaVis (Flex UI)
Semantics Visualization for Information Visualization and Analysis
Semantics Visualizations enable understanding complex matters in an easy way. The research group “Semantics Visualization” is working on processing, enriching, and visualizing any kind of semantic data to provide visually discoverable information. Thereby processes of knowledge acquisition, human information retrieval, and decision making are supported by a variety of interactive visual representations. The developed visualizations do not only allow to investigate the masses amount of... -
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CorNetMap
A tool for Gene Expression Correlation Network
Capabilities of CorNetMap: 1. Read data as tab-delimited text file. Can be used for analysis of any data set beyond gene expression. 2. Capable of both two-dimensional and multidimensional data analysis. 3. Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. -
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Random Bits Regression
Random Bits Regression is a strong general predictor.
...The fast-speed nature of our method not only allows big data analysis but also enables real-time recognition and predictions. The RBR framework also hints the mechanism of brain function and leads to a "wide learning" hypothesis. We believe that this method will make a great impact and enable many downstream applications. -
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QuickNGS
Next-Generation Sequencing workflow system
QuickNGS is a software for efficient and highly reproducible data analysis for Next-Generation Sequencing. -
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Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
RNA-seq analysis is becoming a standard method for global gene expression profiling. However, open and standard pipelines to perform RNA-seq analysis by non-experts remain challenging due to the large size of the raw data files and the hardware requirements for running the alignment step. Here we introduce a reproducible open source RNA-seq pipeline delivered as an IPython notebook and a Docker image. -
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MS-ML Studio
Free and Open-Source Tool for Mass Feature Extraction
Mass spectrometer is a useful tool for biochemistry research field analysis. It is used to identify microorganisms, protein, chemical compounds and complex diseases by blood analysis. There is many tools and libraries to handle different steps of mass spectrometry (MS) data analysis. However, the integration of all these tools lacks user friendly approaches. We developed a machine learning solution capable to handle all steps of MS data analysis. ... -
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Ship Lock Scheduling
Scheduling lockages at ship locks with several parallel lock chambers
This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding... -
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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pyEBSD-GUI
A free software to post-process EBSD data.
pyEBSD-GUI is a free software to post-process Electron Backscatter Diffraction (EBSD) data, inducing IPF mapping, image quality mapping, phase mapping etc, plotting pole figure, data segmentation, statistic analysis of the misorientation distribution etc. The software is written by python, and it supports both script and graphic user interface (GUI). pyEBSD V1.0 will be released soon. -
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CANStream
An applicaton for CAN bus coms development, testing and validation
...Thanks to its powerful built-in mathematical expression evaluator, CANStream can also behave as a real control system feeding back the test device or commanding a third party device with context sensible data. Extended data logging and data analysis features of CANStream provide a comprehensive solution for testing and results analysis CANStream extensively uses the PCAN-Basic API developed by PEAK System for the PCAN-USB adapter You will therefore need to have PCAN-USB adapter and at least one free USB port available to make a complete use of CANStream. ... -
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Gimias
Graphical Interface for Medical Image Analysis and Simulation
GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
...It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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MS2Browser
LC-MS/MS data browser designed for siderophore analysis
...NOTE: The program is written for personal use to assist siderophore analysis using high-resolution LC-MS/MS data. Please contact me if you have any questions about its use, bugs, etc. -
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SHORE is a Next Generation Sequencing data analysis suite. Please find the manual at http://shore.sourceforge.net/wiki
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XParallax viu
Software for automated astrometry
XParallax viu is a free software tool for automated astrometric data reduction of astronomic CCD images. It helps astronomers to perform an accurate astrometric reduction of dozens ore even hundreds of images which can be used in subsequent data analysis process. Fit headers generated by this software are fully compatible with other commonly used image utilities like SAO DS9 or Aladin Sky Atlas. -
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SPRITE
Parallel SNP detection pipeline
SPRITE is an open-source software package providing a parallel implementation of the Single Nucleotide Polymorphisms (SNP) detection genomic data analysis workflow. It consists of three tools: PRUNE for read alignment, SAMPA for intermediate file processing, and PARSNIP for parallel SNP calling. -
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XL Toolbox
Data analysis and visualization for Excel, for free
XL Toolbox is a free Excel statistics addin that helps analyzing and presenting data: Smart custom error bars, chart design, chart export to TIFF; formula builder, transpose wizard, analysis of variance (ANOVA); automatic backups, workbook management and more. -
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Corbata
CORe microBiome Analysis Tools
Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples. -
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Pyclamp
A Python package used to extract and analyse electrophysiological data
Pyclamp is Python package used to extract and analyse electrophysiological data. A graphical user interface has been developed to allow a user to run the pack- age without requiring any knowledge of Python code. Presently, Pyclamp is designed to perform very specific forms of analysis on evoked synaptic responses: Data analysis (under development) : This is a highly user-interactive en-vironment that can be used to discriminate synaptic events, obtain various measures of their kinetics and size, and output the results. ... -
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Tool support for creating FMC* diagrams [Block diagrams, Petri nets, Entity-Relationship diagrams (ERD)] in MS-Visio 2000 and newer. Features: stencils, consistency checking, Petri net simulation, exporter e.g. pdf, ... *Fundamental Modeling Concepts A stripped down version of the stencil set is available for TAM (Technical Architecture Modeling of SAP). This set uses UML notation and contains Block, Activity, Sequence, State, Class, and Component diagrams. It doesn't contain Simulation,...
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Bamformatics
Toolkit and GUI for sequencing data analysis
The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details. -
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Py3DN
Morphometric analysis and visualization of the 3D structure of neurons
...The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z -
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IAP.G2P
IAP - the Integrated Analysis Pipeline
The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.
