Search Results for "gnu/linux"
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Showing 93 open source projects for "gnu/linux"
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Dagster
An orchestration platform for the development, production
Dagster is an orchestration platform for the development, production, and observation of data assets. Dagster as a productivity platform: With Dagster, you can focus on running tasks, or you can identify the key assets you need to create using a declarative approach. Embrace CI/CD best practices from the get-go: build reusable components, spot data quality issues, and flag bugs early. Dagster as a robust orchestration engine: Put your pipelines into production with a robust... -
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harmonypy
Integrate multiple high-dimensional datasets with fuzzy k-means
Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. -
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nango
A single API for all your integrations.
Nango is a single API to interact with all other external APIs. It should be the only API you need to integrate to your app. Nango is an open-source solution for integrating third-party APIs with applications, simplifying API authentication, data syncing, and management. -
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Common Core Ontologies
The Common Core Ontology Repository
The Common Core Ontologies (CCO) comprise twelve ontologies that are designed to represent and integrate taxonomies of generic classes and relations across all domains of interest. CCO is a mid-level extension of Basic Formal Ontology (BFO), an upper-level ontology framework widely used to structure and integrate ontologies in the biomedical domain (Arp, et al., 2015). BFO aims to represent the most generic categories of entity and the most generic types of relations that hold between them,... -
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Gradle Docker Compose Plugin
Simplifies usage of Docker Compose for integration testing
The Gradle Docker Compose Plugin by Avast integrates Docker Compose lifecycle management into Gradle builds. It allows developers to define and manage Docker containers required for integration testing or local development directly from their Gradle build scripts. This plugin automates the startup and shutdown of services, supports container health checks, and enables tight integration between application code and containerized services, enhancing reproducibility and automation in... -
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Recap
Recap tracks and transform schemas across your whole application
Recap is a schema language and multi-language toolkit to track and transform schemas across your whole application. Your data passes through web services, databases, message brokers, and object stores. Recap describes these schemas in a single language, regardless of which system your data passes through. Recap schemas can be defined in YAML, TOML, JSON, XML, or any other compatible language. -
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KubeRay
A toolkit to run Ray applications on Kubernetes
KubeRay is a powerful, open-source Kubernetes operator that simplifies the deployment and management of Ray applications on Kubernetes. It offers several key components. KubeRay core: This is the official, fully-maintained component of KubeRay that provides three custom resource definitions, RayCluster, RayJob, and RayService. These resources are designed to help you run a wide range of workloads with ease. -
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Apache DevLake
Apache DevLake is an open-source dev data platform
Apache DevLake is an open-source dev data platform that ingests, analyzes, and visualizes the fragmented data from DevOps tools to extract insights for engineering excellence, developer experience, and community growth. Apache DevLake is designed for developer teams looking to make better sense of their development process and to bring a more data-driven approach to their own practices. You can ask Apache DevLake many questions regarding your development process. Just connect and query. Your... -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
nichenetr: the R implementation of the NicheNet method. The goal of NicheNet is to study intercellular communication from a computational perspective. NicheNet uses human or mouse gene expression data of interacting cells as input and combines this with a prior model that integrates existing knowledge on ligand-to-target signaling paths. This allows to predict ligand-receptor interactions that might drive gene expression changes in cells of interest. This model of prior information on... -
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Airbyte
Data integration platform for ELT pipelines from APIs, databases
We believe that only an open-source solution to data movement can cover the long tail of data sources while empowering data engineers to customize existing connectors. Our ultimate vision is to help you move data from any source to any destination. Airbyte already provides the largest catalog of 300+ connectors for APIs, databases, data warehouses, and data lakes. Moving critical data with Airbyte is as easy and reliable as flipping on a switch. Our teams process more than 300 billion rows... -
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Jitsu
Jitsu is an open-source Segment alternative
Jitsu is a fully-scriptable data ingestion engine for modern data teams. Set-up a real-time data pipeline in minutes, not days. Installing Jitsu is a matter of selecting your framework and adding few lines of code to your app. Jitsu is built to be framework agnostic, so regardless of your stack, we have a solution that'll work for your team. Connect data warehouse (Snowflake, Clickhouse, BigQuery, S3, Redshift ot Postgres) and query your data instantly. Jitsu can either stream data in... -
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Apache Hudi
Upserts, Deletes And Incremental Processing on Big Data
Apache Hudi (pronounced Hoodie) stands for Hadoop Upserts Deletes and Incrementals. Hudi manages the storage of large analytical datasets on DFS (Cloud stores, HDFS or any Hadoop FileSystem compatible storage). Apache Hudi is a transactional data lake platform that brings database and data warehouse capabilities to the data lake. Hudi reimagines slow old-school batch data processing with a powerful new incremental processing framework for low latency minute-level analytics. Hudi provides... -
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reticulate
R Interface to Python
reticulate is an R package from Posit that creates seamless interoperability between R and Python. It lets you call Python modules, classes, and functions from within R, automatically translating between R and Python data structures. Useful for combining Python tooling with R projects, data analysis, and RMarkdown reports. -
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CellTypist
A tool for semi-automatic cell type classification, harmonization
CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and... -
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Alova.js
Workflow-Streamlined next-generation request tools
Extremely streamline API integration workflow. Quickly find APIs in the editor, and enjoy full type hints even in js projects with the API code automatically generated by Alova's extension. Request in various complex scenes by one line of code. Automatically manage paging data, and data preloading, reduce unnecessary data refresh, improve fluency by 300%, and reduce coding difficulty by 50%. Send requests immediately by watching state changes, useful in tab switching and condition querying.... -
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Searchkick
Intelligent search made easy
Searchkick brings powerful, production-ready search to Rails by mapping Active Record models into Elasticsearch with sensible defaults and easy customization. It supports language analyzers, stemming, synonyms, misspelling tolerance, and highlighting so search results feel natural to end users. Indexing is model-centric: you declare what fields to index, add computed fields, and trigger reindexing via callbacks or background jobs, with options for zero-downtime rolling reindexes. On the... -
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Cassandra Spark Connector
Apache Spark to Apache Cassandra connector
The Apache Cassandra Spark Connector allows Spark jobs (RDDs or DataFrames/Datasets) to read from and write to Cassandra tables. Compatible with Apache Cassandra (v2.1+), Spark 1.0–3.5, and Scala 2.11–2.13, it supports mapping Cassandra rows to Scala case classes, saving results back to Cassandra, and executing arbitrary CQL within Spark applications. -
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Pentaho
Pentaho offers comprehensive data integration and analytics platform.
Pentaho couples data integration with business analytics in a modern platform to easily access, visualize and explore data that impacts business results. Use it as a full suite or as individual components that are accessible on-premise, in the cloud, or on-the-go (mobile). Pentaho enables IT and developers to access and integrate data from any source and deliver it to your applications all from within an intuitive and easy to use graphical tool. The Pentaho Enterprise Edition Free Trial... -
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Stanford Data Miner
Tools for integration and analysis of heterogeneous immunological data
An extensive description of this system is published in the Journal of Translational Medicine (http://www.translational-medicine.com/). In brief, the system consists of two main web applications, a data integration app and a data exploration app. The data integration app is a fully custom Java "Web 2.0" product called Sherpa. Sherpa uses Seam, a platform integrating Asynchronous JavaScript and XML (AJAX), JavaServer Faces (JSF), the Java Persistence API (JPA), and Enterprise Java Beans... -
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Pytente
Uma Ferramenta Computacional para Análise e Recuperação de Patentes
O Pytente é uma solução avançada para automatizar o processo de coleta, armazenamento e tratamento de dados bibliográficos de patentes. A ferramenta foi projetada para simplificar a coleta de grandes volumes de dados em repositórios de acesso aberto. O Pytente garante o armazenamento estruturado das informações, além da validação e eliminação de registros duplicados. Dentre as diversas funcionalidades disponibilizadas pela ferramenta, destacam-se a extração personalizada de subconjuntos de... -
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Mara Pipelines
A lightweight opinionated ETL framework, halfway between plain scripts
...Data integration pipelines as code: pipelines, tasks and commands are created using declarative Python code. PostgreSQL as a data processing engine. Extensive web ui. The web browser as the main tool for inspecting, running and debugging pipelines. GNU make semantics. Nodes depend on the completion of upstream nodes. No data dependencies or data flows. No in-app data processing: command line tools as the main tool for interacting with databases and data. Single machine pipeline execution based on Python's multiprocessing. No need for distributed task queues. Easy debugging and output logging. ... -
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PANDORA
Revolutionizing Biomedical Research with Advanced Machine Learning
PANDORA is a machine learning (ML) tool that can be used to integrate various data types, including clinical, transcriptome and microbiome data and find connections in large datasets. PANDORA can be easily installed using Docker, a pre-built version of the software can be pulled from DockerHub. In order to run a test instance of PANDORA, users will first need to prepare their local environment by downloading, installing, and configuring Docker. genular is a community behind SIMON an... -
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scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
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incubator-seatunnel
SeaTunnel is a distributed, high-performance data integration platform for the synchronization and transformation of massive data (offline & real-time).
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Metl ETL Data Integration
Simple message-based, web-based ETL integration
Metl is a simple, web-based ETL tool that allows for data integrations including database, files, messaging, and web services. Supports RDBMS, SOAP, HTTP, FTP, SFTP, XML, FIXLEN, CSV, JSON, ZIP, and more. Metl implements scheduled integration tasks without the need for custom coding or heavy infrastructure. It can be deployed in the cloud or in an internal data center, and it was built to allow developers to extend it with custom components.