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A file format for exchanging computational models in systems biology
The Systems Biology MarkupLanguage (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.
A common markuplanguage and a parser to generate documentation in any target format (Html, Latex, Trac, Mediawiki...). The core command relies on a Tcl library: it is easy to create new target formats. Doc files are parameterizable via a header.
RANGE: produce random genetic transcription networks in the NEMO language, which when compiled outputs models in Systems Biology MarkupLanguage. Generate synthetic microarray data, or use NEMO alone to SBML-ize a network, or visualize it in cytoscape.
OGDL is a structured format for representing graphs of information, alternative to XML. Its grammar is very simple allowing for compact parsers. The text version is easily readable; the binary version is used for storage and interprocess communication.
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Water: a fast, secure, dynamic OO language and database. Water is an all-purpose language (and meta-language) that runs Web applications in the browser or server-side. Water is compatible with .NET, Java, and C on Windows, Linux and Mac OS X system.
The tool putting HTML/XHTML documents into the Lotus Notes/Domino R5, R6 or R7 databases. The HTML code is aggregated in defined field of document, including files of the resources. Currently is only supported Polish language.
KML is a knowledge base with support of logical modeling. Advanced model is used to represent knowledge as a set of statements similar to natural language sentences. This project hosts a set of model storage library and server (vrb-ols) and clients.
MilkCrate utilizes a new open-source markuplanguage for tabular musical notation, and a unique wiki-styled web interface for data input. Users may generate a number of different document types to view the tabular notation, including .png, and PostScript
Cross-programming-language object serialisation. The library uses a schema to write object networks to, and create object networks from, a file (eg XML). Written in Java with ports to C and C++ to follow. Features include file recovery and versioning.
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YAML (tm) is a straight-forward data serilization language, offering an alternative to XML where markup (named lists and mixed content) are not needed. YAML borrows ideas from rfc822, SAX, C, HTML, Perl, and Python.
HEML, the Hypertext Edit MarkupLanguage, is a simplified markuplanguage. HEML is implemented in a small Web browser that enables quickly editing web pages. HEML can be used for ordinary Web pages or for a program help system.
This Library dynamically translates HTML pages to WML (WAP protocol) pages. WML, which is intended for hand held devices, is very different from HTML and introduces a number of conversion issues. This library utilizes SP for HTML parsing. It comes with
YARML or (Yet Another Readable Markup Langage) is a simple and readable markuplanguage which have the same structure of XML but with new syntax which near to the syntax which used with the high level programming languages like Java,PHP, C and Python.
This project is an initial reference implementation of the VSI-E protocol. The implementation has been done using the C/C++ language and is in the form of a re-useable library developed on the Linux platform.
Adapt is data conversion language developped in 1984 by Norman W. Molhant and Christophe Dupriez. It has been used in many circumstances, it translated itself in many programming environment and it should evolve now toward modern environments like Java.