Search Results for "sbml matlab"
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Showing 3 open source projects for "sbml matlab"
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
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...The SBFC Web Site providing detailed feature description and instructions for installing, using and developing new modules is: http://sbfc.sourceforge.net/ . Currently, SBFC allows the user to convert SBML models into the formats: BioPax, Matlab, Octave, XPP, DOT, and SBGN. Due to its modular design fast development and addition of new converters is highly facilitated. SBFC can be executed in two modes: 1. standalone executable downloading the package provided in this website; 2. web-service at http://www.ebi.ac.uk/biomodels/tools/converters . ...
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EpidermalERKMAPK
Scripts for Modelling Human Epidermal ERK-MAPK Activation
...BMC Systems Biology. doi: 10.1186/s12918-015-0187-6 The model was developed using a set the normalized-Hill differential equation framework, as specified by [Kraeutler, Soltis & Saucerman, (2002). BMC Systems Biology; doi: 10.1186/1752-0509-4-157]. This package includes: - MATLAB code containing the model definition, together with a script to perform non-linear least squares optimisation for a subset of parameters - python scripts which use libSBML to create an SBML representation of the model - SED-ML scripts which execute the SBML model under a range of conditions, produce output plots to recapitulate results shown in Cursons et al. (2015).
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