Search Results for "tool" - Page 3
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Showing 76 open source projects for "tool"
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BriPy
A BRIC-seq data analysis package written in Python.
...It employs metabolic labeling by BrU of newly synthesized RNAs to chase chronological decreases of BrU-labeled RNA (Pulse-chase labeling), followed by immunoprecipitation with antibody for BrU, construction of cRNA library for High-throughput sequencing and computational data analysis. -What is BriPy? BriPy package is a BRIC-seq data analysis tool written in Python. It can calculate RNA half-life for each transcript and draw graphs describing the kinetics of RNA decay. In the future, it will provide several useful modules(e.g. calculating RPKM of each transcript from BAM file or ELAND output file). -Prerequisites To use BriPy package, you will need Python and the following extension packages. ... -
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Census is a comprehensive cross-platform project manager and integration hub for NONMEM, the gold standard tool for model-based pharmacometric data analysis.
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vonMises
Package for dealing with the von Mises periodogram
This is the package of C++ programs facilitating the practical use of the von Mises periodogram. The von Mises periodogram is a data-analysis period-search tool that models the periodic signal with the so-called von Mises function, K exp(nu cos x). The package can be used to compute the periodogram itself, as well as its detection significance levels. It can also perform some Monte Carlo simulations of the periodogram. The details of the theory are given in the following refereed paper: Baluev R.V., 2013, MNRAS, V. 431, P.1167-1179. ... -
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locusvu
Tool for genomics;automates data retrieval from db;enables workflows
LocusVu is a novel Java based software tool that accepts a list of genomic loci (positions on the chromosome) as input and automates fetching of related information (cytogenetic band, gene name, OMIM data etc.) from public databases such as the UCSC genome browser database. It then enables multiple workflows on the retrieved results, like comparing multiple datasets (comparative genomics), viewing neighboring genes for a loci from within the tool itself, or graphically representing these results in bar / pie charts. ... -
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DHIS2 JDMart Offline tool
Offline Data Analysis Tool
This tool is designed to help users download data from their DHIS2 servers for use when they are offline. -
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Xross Tab / QScript
Market Research Data Processing Suite
...This is already being used by various companies in Market Research industry. 2) Tablet/Web enabled Survey Management Companies can launch the same survey, online and over Tablet/mobile. This product is in prototype phase. 3) XTCC, a web based cross tabulation tool that enables companies to carry out real-time analysis. It can analyze very large datasets in a very short period of time. It is in prototype phase. If you are interested in doing a pilot, please write to us. -
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ViStream (http://davis.wpi.edu/xmdv/downloads/) is a tool for the visual analysis of multivariate streaming data. It supports a number of computational data analysis methods and provides numerous visualizations and interactions for exploring dynamic data.
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catcher(keylogger)
Catcher is a keylogger tool
Catcher is free tool for everyone that needs a keylogger to their project. * A new catcher will not be released this year(2013). But scheduled early next year. *manny016 is busy at the moment. *Some issues are being fixed and testing for issues. *The new software's finished last march 2013 but it's being hold because of some personal issues. Thank You For Your Support Please Never Stop Waiting!!! -
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DMETANALYZER
A tool for supporting pharmacogenomics data analysis
We developed DMET-Analyzer a tool for the automatic association analysis among the variation of the patient genomes and the clinical conditions of patients, i.e. the different response to drugs. The proposed system allows: (i) to automatize the workflow of analysis of DMET-SNP data avoiding the use of multiple tools; (ii) the automatic annotation of DMET-SNP data and the search in existing databases of SNPs (e.g. dbSNP), (iii) the association of SNP with pathway through the search in PharmaKGB, a major knowledge base for pharmacogenomic studies. ... -
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GLMNB
GLMNB: a shape-based peak calling tool for ChIP-Seq data analysis
This is the beta-version of a shape-based peak calling tool for ChIP-Seq data analysis. It is built using Generalized Linear Model with Negative binomial distribution. This tool accounts for the common peak shape, local variability of peak shifting distance and negative binomial background noise. -
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EyeMap is a visualization and analysis tool for text reading eye movement data. It can process Unicode, proportion/non-proportion and spaced/unspaced reading materials, which supports various languages and experiment methods.
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NLOPredict is a nonlinear optical prediction and data analysis tool. Nonlinear optical measurements can yield information about the structure of crystals, and orientation of molecules at surfaces and interfaces.
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SNP-Analyzer
SNP-Analyzer
SNP-Analyzer is a tool for the efficient Analysis and management of Affymetrix SNP DMET Data analysis -
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Ginkgo is a spotted microarray data pre-processing platform featuring analysis functionalities for CGH and expression data. [Pathogen Functional Genomics Resource Center (PFGRC) @ J. Craig Venter Institute (JCVI)]
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Command line encryption tool for one time, daemon, or stream data processing. Data stats, check sums, conversion to/from text. Data/keys from files, pipes, standard input. In-place/diverted processing or data-analysis-only. Random, file, password keys.
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Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org
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MathROOT is a tool for high-energy physicists to access the ROOT data analysis framework from within Mathematica
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Sound and speech editor. Sound data analysis and transform tool. Used for speech analysis, labelling and speech synthesis inventory creation.
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Interactive Perl environment for data analysis. It consists of several integrated tools such as a Plotting tool, Interactive Shell, and more. Written entirely in Perl using Tk.
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JNeuron is an analysis tool for multi-neuronal spike train analysis. The tool will allow scientists to organize their spike train data analysis into projects. The tool will implement standard spike train analysis algorithms and also datamining algorithms
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TABSAT
Analysis Tool for Targeted Amplicon Bisulfite Sequencing
TABSAT - Targeted Amplicon Bisulfite Sequencing Analysis Tool A tool for analyzing targeted bisulfite sequencing data generated on an Ion Torrent PGM / Illumina MiSeq. The workflow starts with raw sequencing data, performs quality assessment, and uses a tailored version of Bismark to map the reads to a reference genome. Results are aggregated across all samples, presented in table format, and visualized as lollipop plots.
