Search Results for "high" - Page 2

The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details.

The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.

SFrame is a C++ framework built around the ROOT libraries for analysing particle physics data. It gives a very high performance for processing data, by allowing the user to run his/her code on a distributed farm of machines.

...It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently assembled and managed, including dependency tracking, parallelization, and pipeline-level monitoring, error recovery, and data protection. Pipelines are constructed from modular script files, with job definitions and results stored in easily retrieved job files. ...

eRNA: A RNA data analysis tool for high-throughput RNA sequencing experiments

...It employs metabolic labeling by BrU of newly synthesized RNAs to chase chronological decreases of BrU-labeled RNA (Pulse-chase labeling), followed by immunoprecipitation with antibody for BrU, construction of cRNA library for High-throughput sequencing and computational data analysis. -What is BriPy? BriPy package is a BRIC-seq data analysis tool written in Python. It can calculate RNA half-life for each transcript and draw graphs describing the kinetics of RNA decay. In the future, it will provide several useful modules(e.g. calculating RPKM of each transcript from BAM file or ELAND output file). ...

...The program can be easily incorporated in any pipeline for family-based SNP data analysis, and is distributed as free software under the GNU General Public License. Utsunomiya YT, Alonso RV, Carmo AS, Campagnari F, Visintin J, Garcia JF (2013). mendelFix: a Perl script for checking Mendelian errors in high density SNP data of trio designs. arXiv:1306.2243. You can find our paper at http://arxiv.org/abs/1306.2243.

LaCor is intended for physical data analysis in High Energy Physics field. It was originally designed to aid in lambda hyperon correlations research in the Selex@FNAL experiment, but it should be useful for similar studies.

Parallel Colt is a multithreaded version of Colt - a library for high performance scientific computing in Java. It contains efficient algorithms for data analysis, linear algebra, multi-dimensional arrays, Fourier transforms, statistics and histogramming

The Physics eXtension Library (PXL) is a C++ toolkit for fourvector analysis and hypothesis evolution in high energy physics data analysis.

VISPA is a novel development environment for high energy physics analyses, based on a combination of graphical and textual steering. The main goal of VISPA is to support users in prototyping, performing, and verifying a data analysis of any complexity.

High performance, real-time data analysis engine capable of processing from various sources simultaneously (syslog, files, sockets, etc). Triggers internal and user-defined events based on built-in and user-defined rules.

This library implements self-organizing neural networks, also called Kohonen Nets. They can be used for high dimensional data analysis. Example: content based image recognition ( CBIR ).

MathROOT is a tool for high-energy physicists to access the ROOT data analysis framework from within Mathematica