Search Results for "linux-tools" - Page 22
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Showing 957 open source projects for "linux-tools"
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ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
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Liferay Development Configurator
This tool helps Liferay developers to create a development environment
Liferay Development Configurator (shortly "LDC") is a command line tool which helps Liferay developers to create a fully functional development environment. LDC starts downloading Liferay ZIP online (SDK, Tomcat bundle, portal source and Javadoc); then it unzips them and starts a new Eclipse workspace. LDC actually supports only Liferay CE (Community Edition) starting from 6.1.1 version. You need JRE7 to run LDC. -
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isbntools
A command line tool to extract, transform and get metadata for ISBNs
As of 2015-06-02, this project is no longer under active development. -
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stakka_klm
Kernel module to manage Disc Stakka Units
Kernel Loadable Module to interface with the Disc Stakka units. Other devices to be implemented if/when I can get my hands on them. Objective is to separate the user application from the tedious management of the device (eg. constant polling to prevent their reset function, USB interaction requirements). A /dev device is created per chain through which applications can read/write status and commands. A command-line tool is included to assist with testing and to illustrate the /dev... -
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appledoc
Objective-c code Apple style documentation set generator
appledoc is command line tool that helps Objective-C developers generate Apple-like source code documentation from specially formatted source code comments. It's designed to take as readable source code comments as possible for the input and use comments as well as surrounding source code to generate visually appealing documentation in the form of HTML as well as fully indexed and browsable Xcode documentation set. Additionally, you can of course use documentation generated by appledoc for... -
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Hashpipe
Modular Digestion Tool
Hashpipe is modular hashing tool which can have its functionality easily expanded with new modules. It can be used as a compact command-line tool, a C library and a C++ object. -
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At the moment its simple command line tool to create nice looking schematic libraries in kicad. I hope that it would be usefull for someone. dont need to click anything just write/paste pin names and thats it.
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flickrsync
Command line to to sync photos to Flickr
flickrsync is a command line tool written in Perl that aims to backup a complete directory structure to Flickr. It creates separate albums on Flickr based on the directory structure of the images. The main goal is to upload all pictures without requiring to move them to new folders. It relies on a few Perl packages mainly to handle HTTP requests and the file system. You should create Your own Flickr API keys, authentication token and add them to the application after You have downloaded it. -
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IMG2GSLIB
Converts images to GSLIB grids -NEW: 3D support.
IMG2GSLIB is a small command line tool that converts images to grids into GEO-EAS format readable by geoscientific software such as GSLIB, SGeMS, Isatis, Gocad, Petrel, etc. It now can output 3D volumes from image stacking. The ASCII result is sent to stdout, so you can redirect it using the > operator if you want to save it to a file. Run java -jar IMG2GSLIB.jar without arguments to get help on usage. Requirements: -Java 1.7 -
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis... -
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Bio.B-Gen
Initial system (box) generator for biological molecular simulations
"Bio.B-Gen" is a command line tool to generate initial systems for biological molecular simulations. "Bio.B-Gen" was mainly designed to be used with the GROMACS molecular dynamics simulation package (http://www.gromacs.org). "Bio.B-Gen" depends on the GROMACS topology and force field information (.top and .itp data files) during the generation stage. "Bio.B-Gen" adds specified number of copies of a molecule to an existing configuration to a specified spacial domain inside the system,... -
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Robo-Interface
Robo-Interface is a GUI for Robocopy (Robust File Copy).
Robo-Interface is a GUI or user interface for Robocopy the command line tool from Microsoft and includes all the switches except /UNICODE :: output status as UNICODE. It will build the command string that you can copy and paste on the CMD (Command Prompt), or you can also run it from the application by clicking on the button "Run CMD" or copy the command string to the clipboard by clicking on the button "Copy". You can save job files, and they will display on the jobs table where you can... -
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DR14 T.meter
Compute the DR14 of a given audio file according to the procedure desc
...This tool is very useful to measure how is loud your music and for understanding that a good quality album always has also a good dynamic, and it's also useful for understanding the effects of the so called loudness war. Dr14 t.meter is released under the terms of the GNU GPLv3 license and is intended for the Linux users that can not use the Windows application released by the Pleasurize Music Foundation or the plugin for Foobar2000. I've largely tested this application and it has always returned results identical to those of the official off-line meter. -
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Specify Attachment Parser
Compare file system dir to Specify attachments
The Specify Attachment Parser is a Java based command line tool that compares a file system directory to attachments in Specify and identifies the files not present in Specify. The tool will optionally copy the identified files to a target directory. The tool also accepts a regular expression to match or exclude files from source directory. We wrote the parser becasuse we had a directory with 3k+ images, of which an unknown number were attached in Specify. Using the Specify... -
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CSV*Extractor PRO (command line)
Extract your scalar data from major relational databases.
Windows command line tool for data extraction in CSV format. Supports 14 major databases: DB2 Advanced Enterprise Server DB2 Advanced Workgroup Server DB2 Developer Edition DB2 Enterprise Server DB2 Express DB2 Express C DB2 Workgroup Server Exadata Infobright Informix IDS Informix Innovator C MariaDB MySQL Oracle Oracle XE PostgreSQL SAP Sybase ASE SQL Lite SQL Server Enterprise SQL Server Express Sybase IQ Sybase SQL Anywhere TimesTen -
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grepp
An ultimate text-analysing tool
A command line tool for text file analyis, filtering, splitting and reporting. Runs under Java (1.5+), supports plugins written in Groovy. Has nix and win batch files in distributions. -
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BlockSync
Single file syncing at a block level
BlockSync is a command line tool written in Java, designed to synchronize single large files (such as virtual disk images) across networks with limited bandwidth. It makes use of MD5 hashing to only transfer the data that needs to be transferred. Ideal for use in command line scripts. -
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Monty Hall shell script
A simple command line tool for simulating the Monty Hall problem
The Monty Hall problem is a confusing problem in Maths regarding probability. This script allows for random numbers to be en masse read from a file (allowing PROPER random numbers to come from a hardware source). It accumulates run data and runs very fast meaning that 10000 runs can be done in less than a second on a modern system. While other programs also demonstrate the problem, they don't allow for such mass number handling. You could run it on billions of numbers if you wish so it... -
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node-imagemagick
Imagemagick module for NodeJS
node-imagemagick is a Node.js module that wraps the popular ImageMagick command-line image processing tools, giving JavaScript developers the ability to perform powerful image manipulation tasks from within Node applications. Instead of reimplementing image algorithms in JavaScript, it shells out to the underlying ImageMagick binaries, enabling resizing, cropping, format conversion, compositing, and other transformations with the same proven engine used by many backend systems. ... -
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tags2uml
Generates UML class diagrams, from source code
Generates UML class diagrams, from source code. Please see GitHub page for more info. Command line tool to convert from a Exuberant-ctags tags file to a UML class diagram, through Graphviz, for all object oriented languages supported by ctags The input file is a tags file, generated by Exuberant-ctags using --fields==+latinK. The output file is a Graphviz DOT file whose name is specified through the program options, or to stdout. The DOT file should then be passed to the Graphviz... -
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flv_trim
trim AUDIO flv files
Command line tool to copy part of an audio flv file to a new file. flv files are used to encapsulate audio and video data. This simple program allows copying, without decoding, a section of the file to a new file. It copies the header and meta data, then seeks to the given start and copies to the given end. It can be used to trim single tracks from longer recordings. -
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SCP01Intercept
A tool for Global Platform secure channel protocol 01 decryption.
...Since this tool is currently targeted toward advanced users / programmers who are willing to make tweaks to the code, I will not be distributing binaries. While I'm new to CMake, I believe I have a simple build system working for both Windows and Linux. See the "README" file for more information. Please keep in mind that I do not intend to provide support for this software to the novice user. If you find bugs or would like to see new features, by all means file a ticket, but for questions pertaining to Global Platform, smart cards, and such, I'll probably refer you to the open specifications. :-) Peace. -
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SYNX
A command-line tool that reorganizes your Xcode project folder
A command-line tool that reorganizes your Xcode project folder to match your Xcode groups. Make sure that your project is backed up through source control before doing anything. Execute the command on your project to have it reorganize the files on the file system: -
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
...Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation please refer to the link below: https://sourceforge.net/p/ngsscaffolds/wiki/Documentation/ -
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Tagger#
Command-line media (audio/video/photo) tagger based on TagLib#
Command-line tool for reading and writing metadata in media files, including video, audio, and photo formats. Based on TagLib#: https://github.com/mono/taglib-sharp. Requires .NET 3.5 SP1.
