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1

SASHIMI

The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.

Downloads: 42 This Week

Last Update: 2026-04-18
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2

Jmol

An interactive viewer for three-dimensional chemical structures.

Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...

36 Reviews

Downloads: 801 This Week

Last Update: 2026-05-02
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3

qxrd

QXRD is software for the acquisition and analysis of X-ray data taken with 2 dimensional detectors. The software can drive a Perkin Elmer XRD series flat panel detector and can be remote-controlled via a socket interface, or directly from SPEC

3 Reviews

Downloads: 7 This Week

Last Update: 7 days ago
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4

CueMol

CueMol - Molecular Visualization Framework

CueMol - Molecular Visualization Framework based on OpenGL, Mozilla XULRunner, and javascript

Downloads: 7 This Week

Last Update: 2019-03-31
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