Search Results for "sam"

SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

Retro Computer Image Library decodes Amiga, Amstrad CPC, Apple II, Atari 8-bit, Atari Portfolio, Atari ST/TT/Falcon, BBC Micro, Commodore 64, Commodore 16/116/Plus4, Commodore 128, Electronika BK, FM Towns, HP 48, Macintosh 128K, MSX, NEC PC-80/88/98, Oric, SAM Coupe, Sharp X68000, Tandy 1000, Timex 2048, TRS-80, TRS-80 Color Computer, ZX81 and ZX Spectrum picture formats. The project contains a simple viewer, plug-ins for general-purpose image viewers and editors, and an everything-to-png converter.

Vis aims to be a modern, legacy-free, simple yet efficient editor, combining the strengths of both vi(m) and sam. It extends vi's modal editing with built-in support for multiple cursors/selections and combines it with sam's structural regular expression-based command language. A universal editor, it has decent Unicode support and should cope with arbitrary files, including large, binary, or single-line ones. Efficient syntax highlighting is provided using Parsing Expression Grammars, which can be conveniently expressed using Lua in the form of LPG. ...

CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

Ophcrack is a Windows password cracker based on a time-memory trade-off using rainbow tables. This is a new variant of Hellman's original trade-off, with better performance. It recovers 99.9% of alphanumeric passwords in seconds.

Barracuda is a high-speed sequence aligner based on Sanger's BWA and utilizes the latest Nvidia CUDA architecture for accelerating alignments of sequence reads generated by next-generation sequencers.

Speculative Access to Memory is a library that allows programmers to create threads that access to memory regions speculatively. This means that the read data is not validated until the system is sure that all data dependencies have been resolved.

A tool to register and superpose CTF MEG SAM(g2) result and MRI image into one gray-level image.

Shell and File Manager

This project lets you authenticate users off a pwdump generated file from a windows domain sam database.

SAM (Servo Actuation Manipulator) is a GTK+ based X windows application for controlling anywhere from 1 to 254(so far) servo motors via a serial port connection, specifically this program was made for the Scott Edwards Electronics Mini SSC II.

mx-plugins is a project witch should contain some plugins for the SAMBA file-server. For now it is an sam_ads plugin witch'll provide a Active Diretory LDAP tree as SAM database for SAMBA to run an Active Directory in mixed mode. And an vfs_antivir mo

PHP-HTML::Template is the implementation of a template system for use within PHP scripts, where syntax of templates is the same as that of Sam Tregar's HTML::Template Perl module. The goal of this project is to create a PHP extension module.

Some features are lacking in the 'ES'-compiler for Serious Sam. Here we try to fix them. An '#include' for inside ES itself is the first project, but there may be more.

BSD SAM-BA is a free tool under ISC licence. Like the xp SAM Boot Assistant (SAM-BA.exe) this software provides a means of easily programming different AT91 devices. Communicating with the target device may be done through an RS232 or a USB link.