Search Results for "algorithm" - Page 3
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Showing 326 open source projects for "algorithm"
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Estimates the maximum random close packing fraction of hard spheres with a distribution of diameters, based upon an algorithm in J. Chem. Phys. 131, 244104 (2009).
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CUDASW++: Smith-Waterman Algorithm
The fastest Smith-Waterman protein database search algorithm on GPUs
CUDASW++ software is a public open source software for Smith-Waterman protein database searches on Graphics Processing Units with CUDA. This software have been added to the NVIDIA Tesla Bio Workbench (http://www.nvidia.com/object/swplusplus_on_tesla.html -
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DParser
Scannerless GLR parser generator
This project has moved to https://github.com/jplevyak/dparser The master on github is the stable. Please pull that for the very latest code. DParser is a scannerless GLR parser generator based on the Tomita algorithm. It is self-hosted and very easy to use. Grammars are written in a natural style of EBNF and regular expressions and support both speculative and final actions. -
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xmrMiner
A CUDA based miner for Monero
An optimized Monero miner designed to maximize GPU mining efficiency. -
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StoneValley
An algorithm library written in plain C.
A library that collect several algorithms and data structures. -
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Sudoku command line solver
Solve 9x9 Sudoku Puzzles Using A Command Line Utility
This tool written in C uses the Backtracking algorithm to solve Sudoku puzzles. The idea was born by participating a coding challenge of a German internet forum. https://www.coding-board.de/threads/coding-herbst-die-coding-board-de-coding-challenge.39297/ So it's rather made for fun. However, this code won in terms of speed. Unfortunately, the initiator of the contest has passed away in the meantime. R.I.P. Benjamin. -
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Fiwix
A UNIX-like kernel for the i386 architecture
FiwixOS 3 is a Fiwix distribution, an operating system made from a software collection that is based upon the Fiwix kernel. It basically comprises a Fiwix kernel, GNU tools, libraries and additional software. All the included software is free and open-source software made available both as compiled binaries and in source code form, which allows modifications to the original software. FiwixOS 3 uses the Newlib v3.1.0 as its C standard library, and the Ext2 as its primary file... -
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BoxWorldSolver
Graphical Solver for BoxWorld game
This is a graphical solver program for the BoxWorld game. It is a work in progress, and can currently solve around half of the 100 levels quickly, but struggles on the larger puzzles. Further work is needed on the solver algorithm. -
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v1pad
One-time-pad encryption using a virtual pad
v1pad is a command-line tool that encrypts and decrypts files using one-time-pad encryption. v1pad uses a virtual pad, meaning that the one-time pad is generated dynamically based on user input instead of being stored in a file. The name v1pad is an abbreviation for Virtual One-Time Pad. -
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mdoptcli
Multidimensional Optimizer for Command Line
This program is a command-line interface to several multi-dimensional optimization algorithms coded in the *GNU Scientific Library -- GSL*. Namely the *Simplex* algorithm, which does not need a gradient, and from the gradient-based algorithms the *Conjugate Gradient -- CG* and the *Broyden-Fletcher-Goldfarb-Shanno -- BFGS* methods. The energy (and possibly energy gradient) is evaluated by a given command, which has to accept coordinates on standard input and returns the appropriate... -
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ALEPH-w
Data structures and Algorithms library
... that allows to free deleted entries. Dynamic linear hash tables are implemented too. The main algorithms on graphs are implemented in an easy way and with good performance features. Network Flow (maximum and min cost), cut points, topological sort, spanning trees, min paths. etc. The graphs are generic in the sense that they can contain data independent of the algorithm. Several containers of the C++ STL library are implemented with Aleph-w. Their performance is better than GNU implementation -
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casync
Content-addressable data synchronization tool
A combination of the rsync algorithm and content-addressable storage. An efficient way to store and retrieve multiple related versions of large file systems or directory trees. An efficient way to deliver and update OS, VM, IoT and container images over the Internet in an HTTP and CDN friendly way. Let's take a large linear data stream, split it into variable-sized chunks (the size of each being a function of the chunk's contents), and store these chunks in individual, compressed files in some... -
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C API for determining LDrawDir and SearchDirs from settings found in the various combinations of ldraw.ini, LDRAWDIR etc. LDraw programs will then share the same algorithm and thus find parts and primitives consistently.
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PREESM provides a complete framework for fast prototyping. It generates a simulation and an optimized multiprocessor code from graph descriptions of algorithm and architecture. Please visit the project homepage at http://preesm.sourceforge.net.
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JILRuntime/JewelScript
An object-oriented script language to embed in any application
A general purpose, object-oriented script language that compiles into code for a register based virtual machine. The language is quite similar to object-oriented high-level languages like Java and C#. The library is entirely self-sufficient and ANSI C compliant. It's main purpose is to be embedded in any application to allow automation of that application through scripting. An integrated C++ binding code generator allows you to create bindings for your application's classes in seconds.... -
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haveged is a daemon that feeds entropy into the linux /dev/random pool using a random number generator based upon the HArdware Volatile Entropy Gathering and Expansion algorithm.
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cfPred
Chou & Fasman algorithm implemented using C language.
Chou & Fasman algorithm implemented using C language. It is a CUI tool used for protein secondary structure prediction. -
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Advanced Onion Router is a portable client for the OR network and is intended to be an improved alternative for Tor+Vidalia+Privoxy bundle for Windows users. Some of the improvements include UNICODE paths, support for HTTP and HTTPS proxy protocols on the same Socks4/Socks5 port with HTTP header filtering that generates fake identity-dependent headers every time the identity is changed (proxy chains are also supported), support for NTLM proxies, a User Interface that makes Tor's options and...
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QSdpR
Viral Quasispecies Reconstruction software based on QSdpR algorithm
This is a viral quasispecies reconstruction software for quasispecies assembly problem on mRNA viruses, which is based on a correlation clustering approach and uses semidefinite optimization framework. The software accepts a reference genome, a NGS read set aligned to this reference and set of SNP locations in the form of a vcf file and outputs an optimal set of reconstructed species genomes which describes the underlying viral population. -
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SUPERmerge
ChIP-seq coverage island analysis algorithm for broad histone marks
SUPERmerge is a ChIP-seq read pileup analysis and annotation algorithm for investigating alignment (BAM) files of diffuse histone modification ChIP-seq datasets with broad chromatin domains at a single base pair resolution level. SUPERmerge allows flexible regulation of a variety of read pileup parameters, thereby revealing how read islands aggregate into areas of coverage across the genome and what annotation features they map to within individual biological replicates. SUPERmerge... -
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Random Bits Forest
RBF: a Strong Classifier/Regressor for Big Data
We present a classification and regression algorithm called Random Bits Forest (RBF). RBF integrates neural network (for depth), boosting (for wideness) and random forest (for accuracy). It first generates and selects ~10,000 small three-layer threshold random neural networks as basis by gradient boosting scheme. These binary basis are then feed into a modified random forest algorithm to obtain predictions. In conclusion, RBF is a novel framework that performs strongly especially on data... -
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PSICOV
The unofficial binary for PSICOV: Protein Sparse Inverse COVariance
PSICOV (Protein Sparse Inverse Covariance estimation program) is a coevoultion algorithm applied to very large (typically >=1000 sequences) multiple sequence alignments for precise protein structural contact prediction. This is the unofficial precompiled Windows binary for PSICOV compiled by Chengxin Zhang at Fudan University. The source code is copyrighted by David T. Jones, University College London. -
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Parallel MILC
Parallel decompression for the MILC algorithm
The MILC compression has been developed specifically for medical images and proven to be effective. This algorithm is a parallel version for the decompression phase, meant to exploit the parallel computing potential of the modern hardware. Developed with OpenCL framework (version 1.2), runs on CPU and GPU OpenCL devices. -
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MultiFast
Mass String Search and Replace Solution via Aho-Corasick Algorithm
Multifast provides you with efficient library and tool, to search and manipulate data streams on the fly. It can search for a huge number of strings and replace them in one pass. It contains a tidy and efficient implementation of the Aho-Corasick algorithm as a C library. -
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Photon4K
32768-bit symmetric-key encryption, fully-functional development CLI
Photon4K is a 32768-bit symmetric-key encryption cipher accessed via a basic, yet fully-functional development-oriented Command Line Interface (CLI) utility. The algorithm is intended to be a high-security "symmetric" cipher designed primarily for archival purposes -- http://wikipedia.org/wiki/Symmetric-key_algorithm . Photon4K is implemented as an attempt to take long-established, proven cryptographic techniques to another "level" to contend with the rapid advances in powerful...
