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Showing 3 open source projects for "gene"

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1

scArches

Reference mapping for single-cell genomics

Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.

Downloads: 0 This Week

Last Update: 2023-06-13
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2

CorNetMap

A tool for Gene Expression Correlation Network

Capabilities of CorNetMap: 1. Read data as tab-delimited text file. Can be used for analysis of any data set beyond gene expression. 2. Capable of both two-dimensional and multidimensional data analysis. 3. Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation: https://sourceforge.net/projects/cornetmap/files/Documentation_corNetMap.pdf Sample data for testing: https://sourceforge.net/projects/cornetmap/files/Test%20Data/ Citation: Cite CornetMap as " Khaund, A. ...

Downloads: 0 This Week

Last Update: 2016-12-02
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3

Robinviz

Reliability Oriented Bioinformatic Networks Visualization

Downloads: 0 This Week

Last Update: 2014-03-10
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