Search Results for "bio-bwa-files"
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Showing 193 open source projects for "bio-bwa-files"
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Papermerge
Open Source Document Management System for Digital Archives
...-source software which means that transparency is the core value of our software development. Source code can be reviewed and improved by anyone from anywhere. Papermerge supports multiple users. Each user can be assigned different permissions to perform only a specific kind of action e.g. view only documents from a specific folder. OCR technology is vital part of Papermerge. It extracts text information from scanned documents, PDF, JPEG, TIFF files. -
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marimo
A reactive notebook for Python
..., make working with data feel refreshingly fast, futuristic, and intuitive. Version with git, run as Python scripts, import symbols from a notebook into other notebooks or Python files, and lint or format with your favorite tools. You'll always be able to reproduce your collaborators' results. Notebooks are executed in a deterministic order, with no hidden state, delete a cell and marimo deletes its variables while updating affected cells. -
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Tandoor Recipes
Application for managing recipes, planning meals, building shopping
... on it and thus make improvements we otherwise couldn't. Powerful & customizable search with fulltext support and TrigramSimilarity. Create and search for tags, assign them in batch to all files matching certain filters. Import recipes from thousands of websites supporting ld+json or microdata. Easy setup with Docker and included examples for Kubernetes, Unraid and Synology. -
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Metacrafter
Metadata and data identification tool and Python library
Python command line tool and Python engine to label table fields and fields in data files. It could help to find meaningful data in your tables and data files or to find Personal identifiable information (PII). Metacrafter is a rule-based tool that helps to label fields of the tables in databases. It scans table and finds person names, surnames, midnames, PII data, basic identifiers like UUID/GUID. These rules written as .yaml files and could be easily extended. -
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borb
borb is a library for reading, creating and manipulating PDF files
borb is a library for creating and manipulating PDF files in python. borb is a pure python library to read, write, and manipulate PDF documents. It represents a PDF document as a JSON-like data structure of nested lists, dictionaries and primitives (numbers, string, booleans, etc) This is currently a one-man project, so the focus will always be to support those use-cases that are more common in favor of those that are rare. -
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GemGIS
Spatial data processing for geomodeling
GemGIS is a Python-based, open-source geographic information processing library. It is capable of preprocessing spatial data such as vector data (shape files, geojson files, geopackages,…), raster data (tif, png,…), data obtained from online services (WCS, WMS, WFS) or XML/KML files (soon). Preprocessed data can be stored in a dedicated Data Class to be passed to the geomodeling package GemPy in order to accelerate the model-building process. Postprocessing of model results will allow export... -
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gusty
Making DAG construction easier
gusty allows you to control your Airflow DAGs, Task Groups, and Tasks with greater ease. gusty manages collections of tasks, represented as any number of YAML, Python, SQL, Jupyter Notebook, or R Markdown files. A directory of task files is instantly rendered into a DAG by passing a file path to gusty's create_dag function. gusty also manages dependencies (within one DAG) and external dependencies (dependencies on tasks in other DAGs) for each task file you define. All you have to do is provide... -
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VectorVein
No-code AI workflow
... on the set button. Please fill in API Key of OpenAI to use the AI function and select the output folder for storing the files during workflow output. If you need to use the function of mail delivery, please fill in the mailbox information on the set page. A workflow represents a work task process that includes input, output, and workflow triggering methods. You can arbitrarily define what the input is, what the output is, and how the input is processed and reaches the output result. -
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PipeRider
Code review for data in dbt
... locally or shared. You can compare two previously generated reports or use a single command to compare the differences between the current branch and the main branch. The latter is designed specifically for code review scenarios. In our pull requests on GitHub, we not only want to know which files have been changed, but also the impact of these changes on the data. PipeRider can easily generate comparison reports with a single command to provide this information. -
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Weights and Biases
Tool for visualizing and tracking your machine learning experiments
Use W&B to build better models faster. Track and visualize all the pieces of your machine learning pipeline, from datasets to production models. Quickly identify model regressions. Use W&B to visualize results in real time, all in a central dashboard. Focus on the interesting ML. Spend less time manually tracking results in spreadsheets and text files. Capture dataset versions with W&B Artifacts to identify how changing data affects your resulting models. Reproduce any model, with saved code... -
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VisiData
A terminal spreadsheet multitool for discovering and arranging data
.... Code in the stable branch of this repository, including the main vd application, loaders, and plugins, is available for use and redistribution under GPLv3. VisiData is a free, open-source tool that lets you quickly open, explore, summarize, and analyze datasets in your computer’s terminal. VisiData works with CSV files, Excel spreadsheets, SQL databases, and many other data sources. -
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Luigi
Python module that helps you build complex pipelines of batch jobs
... jobs, dumping data to/from databases, running machine learning algorithms, or anything else. You can build pretty much any task you want, but Luigi also comes with a toolbox of several common task templates that you use. It includes support for running Python mapreduce jobs in Hadoop, as well as Hive, and Pig, jobs. It also comes with file system abstractions for HDFS, and local files that ensures all file system operations are atomic. -
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Gwyddion
Scanning probe microscopy data visualisation and analysis
A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis. -
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dxf2gcode
DXF2GCODE: converting 2D dxf drawings to CNC machine compatible G-Code
DXF2GCODE is a tool for converting 2D (dxf, pdf, ps) drawings to CNC machine compatible GCode. Windows, Linux, and Mac support by using python scripting language. -
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files): https... -
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csv2odf
csv2odf can convert csv data to formatted spreadsheets and documents.
... and documents for LibreOffice, OpenOffice, Microsoft Office Excel and Word. It is open source GPL v3 and crossplatform, it can run on most operating systems that can run Python (Python is required). More details, example files, and online manual at http://csv2odf.sf.net. -
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Advanced Trigonometry Calculator
Precision Trigonometry: Advanced Calculator for Complex Math
Advanced Trigonometry Calculator is equipped with a user-friendly interface that allows for easy input of problems and instant computation. Professionals such as engineers who need to perform advanced trigonometric calculations in their work will find this tool extremely useful. More info by clicking below: https://advantrigoncalc.sourceforge.io/ Advanced Trigonometry Calculator was only and always only developed by the Portuguese Renato Alexandre dos Santos Freitas. Also author of... -
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relax
Molecular dynamics by NMR data analysis
The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using... -
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pdf combiner merger converter splitter
PDF Combiner is a user-friendly, GUI-based tool built in
PDF Combiner is a user-friendly open source free to use, GUI-based tool for combining, pdf to excel, pdf to word, image to pdf, zip, unzip annotate and splitting PDF files. It is easy to use, supports multiple file insert and delete and process, and allows you to adjust the order of files before combining. -
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gnucash-csv-mt940
Convert Banking CSV-Files to MT940 format for Input in GNUCASH
This Program converts CSV-Files downloaded from your Bank Account to MT940-Format for Input to Gnucash. conv-noris-mt940.py convert CSV-Files from www.norisbank.de to MT940-Format Calling: conv-noris-mt940.py CSV-File MT940-File conv-1822giro-csv-mt940.sh convert CSV-Files from www.1822direkt.de to MT940-Format Calling: conv-1822giro-csv-mt940.sh CSV-File MT940-File conv-dkbgiro-csv-mt940.sh convert CSV-Files from www.dkb.de to MT940-Format Calling: conv-dkbgiro-csv-mt940.sh CSV... -
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Docx2PDF The Converter [I.S,A]
Docx-2-PDF: The Converter [Improved.Simplified.Alternative]
Docx-2-PDF Converter' is an desktop application developed using python 3.11.4 and other add-on libaries. Converts image file into PDF file. 'Image 2 PDF Converter' has two modes: 1) Single file - Convert one word (.docx) file into pdf file. 2) From Directory/Folder - Convert word (.docx) files into pdf files from a directory or folder. Compatible only for windows OS. -
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PyExe: Cbz to pdf converter [I.S.A]
PyExe: Cbz to pdf converter [Improved.Simplified.Alternative]
Converts Comic book zip (.cbz) into PDF files. Compatible only for windows OS. -
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Bots-ediint open source edi translator
open source edi translator
Bots-ediint is a file translator for EDI (Electronic Data Interchange). Translate files and databases data format to another one: edifact, x12, tradacoms, xml, json, raw, database (postgres, sqlite, mysql, oracle, ...) and more. Bots-ediint is based on Bots https://bots.sourceforge.net Support Python 2 and Python 3 AS2 communications are carried out with my external software that could work in standalone and/or in a Bots channel to send and receive AS2 messages (SYNC and ASYNC... -
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NZMATH
Python Calculator on Number Theory
... Number Theory' (TAKAGI, Teiji) in Python-NZMATH language. The "notebook" itself is also available together with NZMATH calculator. It is designed for beginning students of algorithmic number theory to self-study Number Theory, Programming and scientific English together. It is possible only by running and reading the programs. You can get the notebook here: https://sourceforge.net/projects/nzmath/files/nzmath-enttakagi/ Visit our home page in detail: https://nzmath.sourceforge.io/ -
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SBEVSL is a collaborative project between Dowling and RIT on the development of a Structural Biology Extensible Visualization Scripting Language, so that users can move freely among various molecular graphics tools, such as rasmol, pymol, raster3d, etc.