Search Results for "python package" - Page 4
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Showing 139 open source projects for "python package"
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pycoQC
pycoQC computes metrics and generates Interactive QC plots
...PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generate a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+. PycoQC is written in pure Python3. Python 2 is not supported. -
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Atgen A2 Automation
Atgen A2 is a radically simple Workload Automation & Scheduling tool.
Atgen A2 is a radically simple IT automation solution that automates application builds, continuous testing, data parsing & processing, report generation, batch processing, job scheduling, and many other IT needs. Avoid running repetitive batch jobs and managing access to deploy and update your applications — automate in a language that approaches plain English, using SSH or WinRM, with no agents to install on remote systems. https://www.atgensoft.com/ You can install a released version... -
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DEPRECATED - KVFinder
Cavity Detection PyMOL plugin
...Please read and cite the original paper ParKVFinder: A thread-level parallel approach in biomolecular cavity detection (10.1016/j.softx.2020.100606). [pyKVFinder] pyKVFinder is available in this Python Package Index (PyPI) repository, https://pypi.org/project/pyKVFinder and this GitHub repository, https://github.com/LBC-LNBio/pyKVFinder. Please read and cite the original paper pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science (10.1186/s12859-021-04519-4). -
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Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
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Zipline
Zipline, a Pythonic algorithmic trading library
...Quantopian also offers a fully managed service for professionals that includes Zipline, Alphalens, Pyfolio, FactSet data, and more. Installing Zipline is slightly more involved than the average Python package. For a development installation (used to develop Zipline itself), create and activate a virtualenv, then run the etc/dev-install script. Please note that Zipline is not a community-led project. Zipline is maintained by the Quantopian engineering team, and we are quite small and often busy. -
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Spectral Python
A python module for hyperspectral image processing
Spectral Python (SPy) is a python package for reading, viewing, manipulating, and classifying hyperspectral image (HSI) data. SPy includes functions for clustering, dimensionality reduction, supervised classification, and more. -
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LIFETIMES
Lifetime value in Python
LIFETIMES is a Python library for customer lifetime value and repeat purchase behavior modeling. It helps analysts estimate how frequently customers may return, how long they may remain active, and how much value they may generate over time. The library is built around probabilistic models commonly used in customer analytics, including transaction frequency and monetary value modeling. -
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repo2docker GitHub Action
A GitHub action to build data science environment images
Trigger repo2docker to build a Jupyter enabled Docker image from your GitHub repository and push this image to a Docker registry of your choice. This will automatically attempt to build an environment from configuration files found in your repository. Images generated by this action are automatically tagged with both latest and <SHA> corresponding to the relevant commit SHA on GitHub. Both tags are pushed to the Docker registry specified by the user. If an existing image with the latest tag... -
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Forecasting Best Practices
Time Series Forecasting Best Practices & Examples
Time series forecasting is one of the most important topics in data science. Almost every business needs to predict the future in order to make better decisions and allocate resources more effectively. This repository provides examples and best practice guidelines for building forecasting solutions. The goal of this repository is to build a comprehensive set of tools and examples that leverage recent advances in forecasting algorithms to build solutions and operationalize them. Rather than... -
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FuzzyWuzzy
Fuzzy string matching in Python
We’ve made it our mission to pull in event tickets from every corner of the internet, showing you them all on the same screen so you can compare them and get to your game/concert/show as quickly as possible. Of course, a big problem with most corners of the internet is labeling. One of our most consistently frustrating issues is trying to figure out whether two ticket listings are for the same real-life event (that is, without enlisting the help of our army of interns). To pick an example... -
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PyQtRPT
Pyside QtRPT
...QtRPT (http://www.qtrpt.tk/index.php) Recommendations: please read "readme.txt" file use QtRptDesigner -> to edit xml files. view examples. Important: from Qt5.12, the package must have the same version and subversion de PySide2 and shiboken2. for example the PyQtRPT_5.12.3 package has a requirement of PySide2_5.12.3 and shiboken2_5.12.3. -
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ProbAbilistic CALculator - a package for computing with probability distributions
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PyX is a Python package for the creation of EPS, PS, PDF and SVG files. It combines an abstraction of the PostScript drawing model with a TeX/LaTeX interface. Complex tasks like 2d and 3d plots in publication-ready quality are built out of these primitives.
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this inventory is developed using python3.2 tkinter, and sqlite3. you can make invoices for a shop using this software. you need python3.2 to run this. no more modules are required since tkinter and sqlite3 were in python3.2 windows package.
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Hetionet
Hetionet: an integrative network of disease
...The JSON and Neo4j formats contain node and edge properties, which are absent in the TSV and matrix formats, including licensing information. Therefore the recommended formats are JSON and Neo4j. Our hetio package in Python reads the JSON format, but it is otherwise a simple yet new format. The Neo4j graph database has an established and thriving ecosystem. However, if you would like to access Hetionet without Neo4j, then we suggest the JSON format. The matrix format refers to HetMat archives, which store edge adjacency matrices on disk. ... -
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Rodeo
A data science IDE for Python
A data science IDE for Python. RODEO, that is an open-source python IDE and has been brought up by the folks at yhat, is a development environment that is lightweight, intuitive and yet customizable to its very core and also contains all the features mentioned above that were searched for so long. It is just like your very own personal home base for exploration and interpretation of data that aims at Data Scientists and answers the main question, "Is there anything like RStudio for Python?"... -
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GNU Hyperbole: The Everyday Info Manager
Create hyperlinks just by dragging, find contacts instantly, ...
GNU Hyperbole (pronounced Ga-new Hi-per-bo-lee), or just Hyperbole, is an amazing programmable hypertextual information management system implemented as a GNU Emacs package. This is the first public release in 2016. Hyperbole has been greatly expanded and modernized for use with the latest Emacs 25 releases; it supports GNU Emacs 24.4 or above. It contains an extensive set of improvements that can greatly boost your day-to-day productivity with Emacs and your ability to manage information... -
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Pyclamp
A Python package used to extract and analyse electrophysiological data
Pyclamp is Python package used to extract and analyse electrophysiological data. A graphical user interface has been developed to allow a user to run the pack- age without requiring any knowledge of Python code. Presently, Pyclamp is designed to perform very specific forms of analysis on evoked synaptic responses: Data analysis (under development) : This is a highly user-interactive en-vironment that can be used to discriminate synaptic events, obtain various measures of their kinetics and size, and output the results. ... -
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QAL
Query Abstraction Layer
...This means that QAL can be backend agnostic about a subset of SQL features and data types. Of course custom SQL:s are also supported. It is currently distributed as a Python 3 Library (pip3 install python3-qal) and Debian .deb package. It is related the Optimal BPM project, see its Optimal Sync application for usage examples. The text of this page is released under the Creative Commons Zero Waiver 1.0 (CC0). -
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ExAM-Exome_Analysis_And_Mining
A whole exome sequencing analysis package and its graphical interface
During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community,... -
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HomeCoop
Tiny Local Consumer Cooperatives Web Ordering System
The Installation guide (install.pdf) included in the package, and an ability to setup a MySQL-PHP linux web site (which many hosting websites provide) is all that's required to help you manage more easily a small consumer cooperative. Hopefully, this web-based system will encourage people to start new consumer cooperatives. Homecoop is a free software, under GPLv3. Source code: https://github.com/ayalas/HomeCoop Wiki: http://sourceforge.net/p/homecoop/wiki/Home/ -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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ThermV
Comprehensive thermal analysis software package
...The modules for peak deconvolution, peak profile analysis and determination of Ea and lnA will be provided first. Full GUI will be provided in beta stage. Due to computational limitations, the code is partly programmed in Python and partly in R. Python code will eventually be fully integrated into GUI. R code might remain standalone, although it will be integrated to a highest possible degree. Distributed under GPL -
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Error Propagation Calculator
Easily propagate measurement errors through mathematical operations.
...-Copy output to the system clipboard by simply double clicking the output field. -Cross-platform: Works on Windows, Linux, and Mac. All calculations are dependent on the uncertainties package (Uncertainties: a Python package for calculations with uncertainties, Eric O. LEBIGOT, http://pythonhosted.org/uncertainties/) -
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BriPy
A BRIC-seq data analysis package written in Python.
...It employs metabolic labeling by BrU of newly synthesized RNAs to chase chronological decreases of BrU-labeled RNA (Pulse-chase labeling), followed by immunoprecipitation with antibody for BrU, construction of cRNA library for High-throughput sequencing and computational data analysis. -What is BriPy? BriPy package is a BRIC-seq data analysis tool written in Python. It can calculate RNA half-life for each transcript and draw graphs describing the kinetics of RNA decay. In the future, it will provide several useful modules(e.g. calculating RPKM of each transcript from BAM file or ELAND output file). -Prerequisites To use BriPy package, you will need Python and the following extension packages. ...
