Search Results for "bed"

CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format.

Firing Range is an intentionally vulnerable web application designed to evaluate the real-world effectiveness of web security scanners and training exercises. Deployed as a cloud-friendly app, it aggregates dozens of vulnerability patterns in repeatable, labeled routes so tools can be benchmarked on coverage and noise. The project doesn’t just include simple XSS forms; it spans variants such as DOM-based issues, context-sensitive sinks, template mishandling, CSRF, open redirects, and mixed...

It is a framework for testing various revisitation algorithms on real datasets. Some algorithms have already been implemented and are available for testing. Additional algorithms can be added by users and evaluated on this test bed.

We have moved to GitHub: https://github.com/cadet The Chromatography Analysis and Design Toolkit (CADET) is developed at the Institute of Bio- and Geosciences 1 (IBG-1) under supervision of Prof. Eric von Lieres. The core of the CADET software is a fast and accurate solver for the General Rate Model (GRM) of packed bed liquid chromatography. The CADET solver covers a wide range of GRM variants, combining different transport and binding models with state-of-the-art mathematical algorithms and scientific computing techniques. The CADET framework also comprises a MATLAB interface and standard routines for parameter estimation, process optimization and experimental design. ...

...Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -pe TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -isize 200 -r 100 -pec (if control is PE) -ann -wig -seq –interfiles note: 1. Default species is HUMAN. ...

GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead...

iPiG targets the integration of peptide spectrum matches (PSMs) from mass spectrometry (MS) peptide identifications into genomic visualisations provided by genome browser such as the UCSC genome browser (http://genome.ucsc.edu/). iPiG takes PSMs from the MS standard format mzIdentML (*.mzid) or in text format and provides results in genome track formats (BED and GFF3 files), which can be easily imported into genome browsers. For more details about iPiG and it's functionallity, please see "iPiG: Integrating Peptide Spectrum Matches Into Genome Browser Visualizations" Mathias Kuhring and Bernhard Y. Renard (http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0050246)

Criminal minds revealed and played. Criminal acts in all sorts of places with great animation and daily updated by Developer Fontella Moneet Farrar.

This project aims to create an administration console for managing booking for small entities like bed and breakfast

Castadiva is a test bed based on low-cost off-the-shelf devices, which is used to test protocols developed for MANETs. Castadiva is completely compatible with the file format used by the ns-2 simulator.

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74

LinuxMCE is a powerful system that will revolutionise your home. A fantastic expandable media centre and PVR is just the beginning. The system can also manage your network, security, lighting and phone calls and you can control it all from anywhere.

DAI = Distributed Artificial Intelligence The projected is intended to be a test bed for AI related concepts and technologies, not necessarily an end user product, though that could change. Some of the modules can be modified for other uses.

Mambo Residents (aka mosres) is a mambo component for managing hotels, bed and breakfasts and other accomodation related businesses. For upto date information & monitored forums visit http://mamboforge.net/projects/mosres/ and http://tikiwiki.mosres.net

Rental management software for scheduling guests at a rental property such as a bed and breakfast, cottage, etc.

OpenRMS is an open source reservation management system for small hotels and bed&breakfasts. It is written in Python and PHP, is cross-platform and supports multiple database backends. The web components allow for electronic booking online.

This is a java remake of the classical Lode Runner game. In addition, the project intends to be a test-bed for various game AI and mobile agents techniques.

freeESim (stands for "Free Engine Simulator") is a test-bed/test-harness for development of new engine management systems (EMS)