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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
Search for MHC-like motifs in peptide collections (Python 3 version).
For more information, you can have a look at the README.md file in the source code tree:
https://sourceforge.net/p/lp-csic-uab/laiamotifs3/code/ci/default/tree/README.md
A taxonomically intelligent biodiversity searchengine
This is a pure Python CGI-based implementation of a taxonomically intelligent species searchengine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's.
Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide searchengine.