Showing 172 open source projects for "user mode linux"

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  • 1
    Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.
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  • 2
    Visualize your bioinformatics analysis process.
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  • 3
    SNP ratio test
    The SNP ratio test can assess significance of enrichment of significant associations in genome-wide association studies. Tests can be applied to pathways such as KEGG/GO, or user-defined pathways to test specific hypotheses. See link below for more.
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  • 4
    Perform multivariate analysis based on di-nucleotide frequencies from DNA sequence data.
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  • 5
    Count and analyze Single Nucleotide Polymorphisms (SNP) from sequence data.
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  • 6
    This is a utility to convert a set of fasta formatted sequences along with output from ELAND or SOAP (and other next generation sequence alignment in due time) to make them viewable using eagleview.
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  • 7
    JCVI Tools
    Lightweight bioinformatics tools and libraries developed at JCVI.
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  • 8
    Neurospaces is a development center for tools in computational neuroscience. See http://www.neurospaces.org/
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  • 9
    A repository linking to eight Bioinformatics Resource Centers (BRCs) sponsored by the NIAID. The BRCs are providing web-based resources to scientific community conducting basic and applied research on organisms considered potential agents of bioterrorism
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  • 10
    BCAR is a library for the associative classification, which denotes "Boosting Class Association Rules". BCAR provides a general tool for classification tasks with various types of input data.
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  • 11
    Harmonize + gene = Harmogene Efficiently create sets of genome annotations ("consensus annotations") from one or more source genomes using simple rules and and apply those annotations to one or more target genomes. See the Trac page for more info.
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  • 12
    EdgeExpressDB (eeDB) is a federated data abstraction system designed for integrating, interpreting, and visualizing very large biology datasets. It is designed for scaling beyond Petabytes and 10^13 objects. http://fantom.gsc.riken.jp/4/edgeexpress
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  • 13
    ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
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  • 14
    PeptideProphet and ProteinProphet CGI program source files modified to make interoperable with Rosetta Biosoftware's Elucidator(R) System. All files are published and distributed under the LGPL license, v2.1.
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  • 15
    ReAlignerV is an alignment tool focusing on genomic nucleotide sequences upstream of genes. ReAlignerV integrates TRANSFAC(R) Match(TM) results to detect the conserved TFBSs. ReAlignerV is robust against transposable element insertions.
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  • 16
    GPSR is a resource for genomics, proteomics and systems biology. The aim of this project is to build comprehensive resources in the field of bioinformatics.
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  • 17

    SrsUrlApi

    Client library to access Sequence Retrieval System (SRS) servers.

    A Perl client library to access Sequence Retrieval System (SRS) servers using the REST/CGI API provided by SRS.
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  • 18
    Multiomics Information Management and Annotation System (MIMAS)
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  • 19
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
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  • 20
    Submission tool for Microarray experiments
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  • 21
    EMMA 2 is web-based server application for management, annotation, and analysis of microarray data. It provides mapping of gene expression data onto pathway data extensible analysis and visualization functions and MAGE-ML support.
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  • 22
    ArrayPipeLine is a web-based Laboratory Information Management system, using MySQL, Perl CGI and R. It enables high-throughput analysis of microarray data, providing automation of data handling, and rapid creation and implementation of analysis pipelines
    Downloads: 1 This Week
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  • 23
    A header file (cexcept.h) that provides Try/Throw/Catch macros similar to those available in C++ for error handling.
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  • 24
    Celsius is a data warehouse that provides web services for upload, archival, download, annotation, quantification, and normalization of all Affymetrix microarray platforms.
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  • 25
    A novel algorithm to layout the contigs with more than one reference genomes at a time using global searches
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