Showing 35 open source projects for "net-responsibility"

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  • 1
    Gemi

    Gemi

    PCR primers / probes design from multiple & degenerate sequences

    Gemi, an automated, fast, and easy-to-use bioinformatics tool with a user-friendly interface to design primers and probes for polymerase chain reaction (PCR). Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large dataset of sequences efficiently. Python source code is available upon request. Milestone:...
    Downloads: 1 This Week
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  • 2
    VANESA
    This project moved to GitHub in 2021 and is available at: https://cbrinkrolf.github.io/VANESA/ This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA. VANESA also offers Petri net modeling of extended hybrid Petri nets which can be also simulated using the OpenModelica framework.
    Downloads: 0 This Week
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  • 3
    DigiOz .NET Portal

    DigiOz .NET Portal

    ASP.NET MVC Based Portal CMS System to Create an Instant Website

    DigiOz .NET Portal is a FREE web based portal CMS system written in ASP.NET MVC 5 in C# which uses a Microsoft SQL Database to allows webmasters to setup and customize an instant website for either business or personal use. List of Technologies used: - ASP.NET MVC 5 - Microsoft SQL Server - Bootstrap - HTML 5 - jQuery Demo Site: http://digioznetportal.digioz.net/ Source Code: https://sourceforge.net/p/digioznetportal/codenew/ci/master/tree/ Installation Instructions: https://sourceforge.net/p/digioznetportal/wiki/Home/ Help Wanted: If you are a developer, and wish to join the project, please email us at support@digioz.com.
    Downloads: 1 This Week
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  • 4
    HCS Analyzer

    HCS Analyzer

    High Content Screening Analyzer

    HCS Analyzer is an open source software dedicated to High Content Screening data processing and analysis.
    Downloads: 0 This Week
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  • 5
    This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
    Downloads: 3 This Week
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  • 6
    RoadRunner represents a state-of-the-art simulation library for SBML models. It is fast, portable and accurate. This projects hosts the library and tools using the library.
    Downloads: 0 This Week
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  • 7
    The Systems Biology Results Markup Language is a language describing data. Unlike flat data formats, SBRML allows describing the origin of the data as well. This project hosts a library and tools for using SBRML.
    Downloads: 0 This Week
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  • 8
    Morpheus search algorithm

    Morpheus search algorithm

    a mass spectrometry–based proteomics database search algorithm

    Morpheus is a mass spectrometry–based proteomics database search algorithm designed from the ground up for high-resolution tandem mass spectra. We have discovered that for high-resolution MS/MS, simple spectrum preprocessing and scoring performs superior to more complex algorithms originally developed for low-resolution MS/MS, such as Sequest, Mascot, and OMSSA. Morpheus is also very fast—up to nearly 5 times faster than OMSSA for large human datasets. It is written in C# and is available...
    Downloads: 3 This Week
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  • 9

    Sequencia

    Protein Primary Sequnece Analysis

    ...SEQUENCIA Tool is an offline Tool of Primary Sequence Analysis, which is quite prevalent Topic for Researchers all over the world. Sequence Name, Sequence Length, Absorbance, Net charge, Iso electric charge, Amino acid composition, Amino acid classification, Aliphatic Index, Instability Index, Average Hydropathy etc are the Primary Sequence Analysis related Attributes for which this Tool exist. This work includes all the Physiochemical Properties- related to Primary Sequence Analysis under a common platform. ...
    Downloads: 0 This Week
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  • 10

    SWAPHI: Smith-Waterman on Intel Xeon Phi

    The first protein sequence database search on shared-host Xeon Phis

    The first parallel algorithm to accelerate the Smith-Waterman protein database search on shared-host multiple Intel Xeon Phi coprocessors. By searching against the UniProtKB/TrEMBL database, SWAPHI achieves a performance of up to 58.8 billion cell updates per second (GCUPS) on a single Xeon Phi and up to 228.4 GCUPS on four Xeon Phis.
    Downloads: 0 This Week
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  • 11
    Shoal

    Shoal

    A lot of fish in a shoal, in a gigantic scientific ocean.

    Ours organization website GCModeller.org is coming online soon! Shoal Shell is the sub project for the "genome-in-code"(http://code.google.com/p/genome-in-code/) virtual cell modelling project of the bacteria Xcc 8004. Shoal Shell aim at provide the modelling tool and the debugging tool for the GCModeller virtual cell modelling, And from the extendible library package, shoal shell can manage to accomplish the entire modelling job for any other bacteria species. Shoal Shell Project...
    Downloads: 0 This Week
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  • 12
    Interactive SBML Simulation Tool
    This project hosts the 'Simulation Tool', an extensible, interactive environment for carrying out simulation experiments of SBML models. This project can use RoadRunner or SBW enabled simulators to carry out simulations.
    Downloads: 0 This Week
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  • 13
    ILNumerics.Net
    math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net
    Downloads: 0 This Week
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  • 14
    Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
    Downloads: 0 This Week
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  • 15
    openDICOM.NET - DICOM library, console tools, DICOM viewer/browser for Mono/.NET and Beagle Desktop Search Plugin. The project supports ACR-NEMA and DICOM file formats and provides transcoding to XML. It is written in C# and licensed under (L)GPL.
    Downloads: 6 This Week
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  • 16
    compare-results

    compare-results

    Program comparing Simulation Results for the SBML TestSuite

    Compare SBML Test Suite Results =============================== The [SBML Testsuite](http://sbml.org/Facilities/Online_SBML_Test_Suite) allows developers of ODE based simulators to test their implementation against a large number of test cases that test a wide aspect of the [SBML Specifications](http://sbml.org/Documents/Specifications). While implementing my simulator [RoadRunner](http://roadrunner.sf.net) I wanted to be able to compare it using a wider range of parameters: -...
    Downloads: 0 This Week
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  • 17

    Introminer

    Extracts intronic information from annotated genomic sequence

    Created by Julie Shay and Claudio Slamovits. Introminer reads a sequence file with genomic data that contains sequence and intron positions in genbank format. It extracts positional and sequence data as well as the intronic sequences and other important parameters to study gene architecture and intron evolution at a genome-wide scale.
    Downloads: 0 This Week
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  • 18
    AUDocker
    AUDocker is a GUI for AutoDock Vina.. helps in virtual screening of huge number of ligands continuously. Helps in resumption of work in accidental shutdowns..
    Downloads: 7 This Week
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  • 19

    SPA - SNP based pathway analysis

    SNP based pathway analysis

    Name: SPA Full name: SNP based pathway analysis Maintainer: jiangyongshuai@gmail.com liuguiyou1981@163.com Language: R package Description: SPA is an R package which can identify disease or phenotype related pathways. Input rs# and GWAS test p-values, you can get the related pathways.
    Downloads: 0 This Week
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  • 20
    OpenVista (R)
    OpenVista(R) is the open-source version of VistA, an enterprise grade health care information system developed by the U.S. Veterans Affairs and deployed at 1,500 global facilities. OpenVista is a registered trademark of Medsphere Systems Corporation
    Downloads: 4 This Week
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  • 21
    A Collection of STAR/CIF processing libraries and related tools, including sub-projects: AStar, TEStar and others...
    Downloads: 1 This Week
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  • 22
    DASSGUI
    DASS-GUI is a graphical user interface for pattern search in non-sequential data.
    Downloads: 1 This Week
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  • 23
    Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.
    Downloads: 0 This Week
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  • 24
    Acanthocephalan Proboscis Profiler is a tool for detecting acanthocephalan morphotypes.
    Downloads: 0 This Week
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  • 25
    ANT is a lightweight implementation in C of a kind of artificial neural net called Multilayer Perceptron, which uses the backpropagation algorithm as learning method. The package includes an introductory example to start using artificial neural nets.
    Downloads: 1 This Week
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