Showing 109 open source projects for "easy-creds"

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  • 1
    tigreBrowser is a web-based browser for ranking results from R/Bioconductor package tigre and similar tools. It allows easy viewing, sorting and filtering of visualisations of models produced by tigre.
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  • 2
    alignlib is a C++ library for computing and manipulating sequence alignments of protein sequences. Most of the functions and classes are exported to python thus permitting easy scripting of complex tasks. Alignlib has moved to github (https://github.com/AndreasHeger/alignlib)
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  • 3
    EASER

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.
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  • 4
    Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
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  • 5

    locusvu

    Tool for genomics;automates data retrieval from db;enables workflows

    ... these results in bar / pie charts. LocusVu has a simple easy-to-use GUI on the frontend which enables intuitive user interaction with the underlying logic. The tool can be easily extended to add support for other databases (eg. Ensembl) or to fetch information from other tables in the database. Thus, LocusVu provides a basic framework that can be used by users and developers alike in simplifying existing workflows and creating newer ones to support data analysis in genomics.
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  • 6

    MatrixMaker

    Custom substitution matrix creator

    Create custom substitution matrices for BLAST protein search. Easy to use GUI based application.
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  • 7
    Clover

    Clover

    a simple lab information management system (LIMS)

    Clover is a simple lab information management system (LIMS) designed for biology labs, especially plant biology labs. It provides an easy way to manage and handle the information of lab material, catalogs (inventories), and orders. USE PHP 5.*! Clover will not work on PHP 7.*! The wiki page contains detailed help documents: https://sourceforge.net/p/cloversystem/wiki/Home/ For lab instrument scheduling, please use Cloveriver: https://sourceforge.net/projects/cloveriver/ Please do NOT store...
    Downloads: 1 This Week
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  • 8

    TFAST

    Software for analysis of afSELEX-seq data

    Transcription Factor Analysis using SELEX with High-Throughput Sequencing (TFAST) is software developed by the Mobley lab at the University of Michigan designed to assist with transcription factor binding site discovery using data generated from aptamer-free SELEX-seq (afSELEX-seq).
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  • 9

    noise-free-cnv

    program for analyzing and manipulating DNA microarray data

    CNV calling software may produce false-positive calls due to imperfect source material. Direct inspection of the microarray data with the noise-free-cnv software helps to appreciate the quality of the data and to identify artificial calls. With noise-free-cnv it is possible to visualize individual datasets, to compare different datasets and to perform simple transformations. The visualization and the suppression of genomic waves, the comparison of two datasets by subtraction and the...
    Downloads: 1 This Week
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    The Voice API that just works | Twilio

    Build a scalable voice experience with the API that's connecting millions around the world.

    With Twilio Voice, you can build unique phone call experiences with one API, to create, receive, control and monitor calls with just a few lines of code. Create an engaging voice experience that you can quickly scale and modify with a wide array of customization options and resources.
  • 10
    easyPAC

    easyPAC

    easy Primer prediction from Alignments and Consensus sequences

    Primer prediction from alignments and consensus sequences. easyPAC applies all standard quality tests to degenerate primer and primer pairs and optionally maps all primer candidates to an arbitrary number of reference files like repeat databases or genomes to ensure target specifity.
    Downloads: 1 This Week
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  • 11
    PIVOT

    PIVOT

    PIVOT is a simple yet flexible visualization data tool

    PIVOT is a simple yet flexible visualization tool based on Circos (Krzywinski et al., 2009), which offers a fast and aesthetical visualization of data and information. The Protein Interaction Visualization and Observation Tool (PIVOT) was developed specifically for the visualization of protein interaction. It is difficult to spot the proteins that have an interaction when given a large list of proteins but with PIVOT, it is easy to identify the them at a glance. PIVOT displays an image showing...
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  • 12

    GenOO-HTS

    A Modern Perl Framework for High Throughput Sequencing analysis

    GenOO-HTS [jee-noo] is an open-source; object-oriented Perl framework specifically developed for the design of High Throughput Sequencing (HTS) analysis tools. The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead...
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  • 13
    The Boolean Network Toolkit is an efficient and easy-to-use object-oriented C++ library which enables researchers to simulate ad carry out experiments (like attractor sampling and Derrida plot computation) on large boolean networks.
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  • 14
    siMacro is simple GUI tool for cell based genome wide siRNA screen data processing. It calculates statistical parameters such as Z score and robust Z score.
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  • 15

    Anfani EHR

    Easy-to use electronic medical records framework

    Ànfàní EHR - an easy to use and electronic health records framework for hospitals and health centers . Th Ànfàní EHR project project was initially created for developing countries, so ease of use was a priority. The basic system which is just for medical records keeping. It offers following features: - Electronic records forms - File uploads - Image uploads - Other media uploads -(audio, video) - Internationalization - Interface translation in English, French, Spanish , Portuguese, Arabic.
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  • 16
    The Self-Organizing Map Maker for Education and Research. Features include 3D-visualization of the training process, various 2D and 3D map topologies, easy extensibility to additional topologies.
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  • 17
    Pontos

    Pontos

    Pontos calculates distance matrices from DNA sequence alignments.

    Pontos is an easy-to-use, graphical Java program for the calculation of uncorrected distance (or similarity) matrices from DNA sequence alignments in PHYLIP format. It also creates "difference" alignments from regular ones (and vice-versa). It can handle gaps and ambiguities in different ways. Gaps can be: - all used; - all ignored; - ignored only at the ends of the sequences, in a pairwise manner; - ignored only at the ends, but now globally (in effect trimming the whole alignment...
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  • 18
    If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
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  • 19
    Subnetwork Analysis Plugin for BiNA
    The plugin allows automatic highlighting of pathways in an easy and understandable manner.
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  • 20
    NetBuilder' - Apostrophe
    NetBuilder' is a tool for building, visualizing, and simulating multi-layered biological networks, structured as hierarchical Petri-nets. It has a built-in stochastic simulator, but also provides easy access to other simulation and analysis.
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  • 21
    ToxOtis
    ToxOtis is a Java interface to the predictive toxicology services of OpenTox. ToxOtis is being developed to help both those who need a painless way to consume OpenTox web services and for ambitious service providers...
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  • 22
    Easy Homozygosity Profiling of Affymetrix SNP Arrays
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  • 23
    MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.
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  • 24
    Easy install web server for Genetic and Molecular Biological Laboratory so that PI can update lab homepage himself. Also serve as Lab database server that store DNAStrider plasmid , order tracking and mouse colony database.
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  • 25
    NumericalFISH is a bioinformatics graphical tool for easy analysis of BLAST or BLAT results, especially aimed at the study of duplications or segmental duplications.
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