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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
Identifiers.org is a system providing resolvable and persistent identifiers, in the form of URIs, used to identify data for the scientific community, with a current focus on the Life Sciences domain.
The provision of resolvable identifiers (URLs) fits well with the Semantic Web vision, and the Linked Data initiative.
The resolving services of Identifiers.org rely on the information stored in the MIRIAM Registry.