428 projects for "java" with 2 filters applied:

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  • 1
    HATS (Haplotype Amplification in Tumor Sequences) is a tool that calls the amplified alleles, and thus amplified haplotype, in copy number aberration regions in next generation sequencing tumor data. The amplified haplotype may reveal gene variants.
    Downloads: 0 This Week
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  • 2
    gfit creates an interface between computational models and experimental data and provides tools for their analysis
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  • 3
    TMAJ is software for Tissue MicroArrays (TMA's). Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program.
    Downloads: 0 This Week
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  • 4
    JCVI VICS
    VI Compute Server (VICS) is a collection of grid-enabled bioinformatics tools with HTTP (browser) and Web Services (scriptable) interfaces. JCVI VICS is licensed under the Perl Foundation Artistic License 2.0.
    Downloads: 0 This Week
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  • 5
    A simple tool to import the diff, gtf and tracking files from cufflinks, cuffcompare, cuffdiff into a new sqlite database for data mining.
    Downloads: 0 This Week
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  • 6
    Adjusting PKL-Files derived from MS-experiments. The development of the project has been MOVED TO https://github.com/binfalse/adjustpkl
    Downloads: 0 This Week
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  • 7
    Executable program that measures sizes and other properties of colonies arrayed in a grid format (intended for 768, 384, or 96 colonies on agar plates) from jpeg images
    Downloads: 0 This Week
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  • 8
    This is bionically project.
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  • 9
    This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.
    Downloads: 0 This Week
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  • 10
    The Xholon project explores: software as systems of linked nodes, organized hierarchically. The Xholon toolkit supports this back-to-basics approach, and demonstrates practical benefits through examples from numerous domains.
    Downloads: 0 This Week
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  • 11
    JHeatChart
    JHeatChart is a simple Java library for generating heat map charts.
    Downloads: 0 This Week
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  • 12
    HeliconiusDB is a project to develop a database schema and web-based software tools for the study of Heliconius butterflies (and other organisms) in evolutionary biology.
    Downloads: 0 This Week
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  • 13
    Cloe (Closure Editor) is a graphical, Java based tool used for editing contigs, resolving contig features, and closing both sequencing and physical gaps.
    Downloads: 0 This Week
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  • 14
    Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)
    Downloads: 1 This Week
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  • 15
    Genevar (GENe Expression VARiation) is a platform of database and web services for the integrative analysis and visulization of SNP-gene assocaitaions in eQTL studies.
    Downloads: 0 This Week
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  • 16
    JFlux is a java library and graphical user interface to work with flow cytometry data. In particular, it is adapted to the COPAS biosorter and can analyze expression profiles.
    Downloads: 0 This Week
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  • 17
    A comparative map and trait visualization framework enabling visual integration of genomic data from disparate data sources and allowing rich client-side interactivity and manipulation. Extensible through plugins for new datasources and algorithms.
    Downloads: 0 This Week
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  • 18
    A tool to construct the metabolic networks from KEGG, and compare the constructed metabolic networks. Phylogenetic trees can be constructed along the case.
    Downloads: 0 This Week
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  • 19
    A Collection of classes related to biological and bioinformatical topics.
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  • 20
    Basic Electronical Medical Management (BEMM) is an application to control medical data of a set of patients. It is built on top of open source technologies, to provide an integration skeleton of mvn, Datanucleus, Spring, Vaadin, Acceleo technologies.
    Downloads: 0 This Week
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  • 21
    Small set of utilities used by the 2010 iGEM Mexico-UNAM-CINVESTAV Team to automate biobricks from files
    Downloads: 0 This Week
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  • 22
    DIVAT (Diagnostic Immunohistochemistry Visualization and Analysis Tool) is designed to graphically analyse comprehensive data sets of immunohistochemical results as those used in clinical diagnostic pathology.
    Downloads: 0 This Week
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  • 23
    CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
    Downloads: 2 This Week
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  • 24
    Contextor
    Contextor is a light-weight simple-to-use Java based library to help developers and researchers working with the general concept of a resource; as examples, resources can be text resources, web resources, images and videos.
    Downloads: 0 This Week
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  • 25
    TreeViewJ is a Java tool for visualizing, editing and analyzing phylogenetic trees. The software allows researchers to color and change the width of branches, and add names to nodes. Collection dates can be mapped onto a timeline, and sorted.
    Downloads: 1 This Week
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