Showing 9 open source projects for "database design tool"

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  • 1
    CBFlib
    CBFLIB is a library of ANSI-C functions providing a simple mechanism for accessing Crystallographic Binary Files (CBF files) and Image-supporting CIF (imgCIF) files. The CBFLIB API is loosely based on the CIFPARSE API for mmCIF files.
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    Downloads: 130 This Week
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  • 2

    Universal-mer

    A CLI tool for k-mer counting with all possible sizes of k at once

    Universal-Mer is a k-mer counting tool for all possible size of k at once. More than typical k-mer counting tools, the program can summarize the exact counting result of 1-mers to l-mers at once where l = the length of longest repeated substring in the input sequence where now the maximum length is set to 100000-mers. The program can report exactly the number of all repeat (freq>1) and unique(freq = 1) mers , and the number of all possible substrings of sequences without cutting off any low...
    Downloads: 0 This Week
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  • 3
    Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.
    Downloads: 49 This Week
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  • 4
    FMFilter

    FMFilter

    Fast Model Based Variant Filtering Tool

    Filtering out the prominent portion through the excessive amount of information produced by next generation techniques is a challenging task. Current tools enable to analyze next generation sequencing data in various methods. However, there is still need for fast, easy to use and efficacious tools. We provide an efficient filtering tool for next generation sequencing data produced by genetic disease studies. FMFilter allows to choose one of the inheritance models (recessive, dominant, compound...
    Downloads: 0 This Week
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  • 5
    BMDExpress is a bioinformatics tool used to analyze microarray dose-response data. The analysis provides benchmark dose estimates at which different cellular processes are altered in toxicogenomic experiments.
    Downloads: 0 This Week
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  • 6
    balaBLAST
    balaBLAST is a free useful tool for the parallel execution of NCBI BLAST. It exploits I/O parallelism and database partitioning, while guaranteeing the same output reporting of a single-core NBCI BLAST. Really easy to install, with package Debian.
    Downloads: 0 This Week
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  • 7
    This tool is designed to solve generalized pattern matching problem, by which we only find a set of sub-patterns, ignoring the gaps in between the sub-patterns. This tool is extremely fast and also has good tolerance to errors.
    Downloads: 0 This Week
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  • 8
    Neurospaces is a development center for tools in computational neuroscience. See http://www.neurospaces.org/
    Downloads: 0 This Week
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  • 9
    runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and conditions.
    Downloads: 0 This Week
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  • Cyber Risk Assessment and Management Platform Icon
    Cyber Risk Assessment and Management Platform

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