Showing 28 open source projects for "advanced strategic command"

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  • 1
    ESTScan is a program that can detect coding regions in DNA/RNA sequences, even if they are of low quality (e.g. EST sequences). ESTScan will also detect and correct sequencing errors that lead to frameshifts.
    Downloads: 1 This Week
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  • 2
    'isotope' is a small command-line utility to calculate the isotope pattern for a given chemical formula. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
    Downloads: 0 This Week
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  • 3
    bruread is a program to read and display NMR data in the Bruker XWIN-NMR format. The program has a command-line interface and a graphic display based on gnuplot. - Note that this is only an NMR spectrum *viewer*, not a full-fledged data evaluation suite
    Downloads: 0 This Week
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  • 4
    hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
    Downloads: 0 This Week
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  • 5
    ChIP-Seq
    The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
    Downloads: 1 This Week
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  • 6
    Tagger is a tool which allows searching fixed-sequence tags (or sequence branches) against entire genomes or mRNA reference sequence databases.
    Downloads: 1 This Week
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  • 7
    MrBayes
    MrBayes is a program for the Bayesian estimation of phylogeny. The project has been moved to GitHub: https://github.com/NBISweden/MrBayes
    Downloads: 2 This Week
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  • 8
    Suite of tools for DNA sequence analysis - searching (EST, mRNA, sequencer reads); aligning (ESTs, mRNA, whole genome); and analysis (repeats, kmers).
    Downloads: 9 This Week
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  • 9
    FieldTrip

    FieldTrip

    The MATLAB software toolbox for MEG and EEG analysis

    FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis.
    Downloads: 0 This Week
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  • 10
    starrynite is an image analysis tool for tracking fluorescently-labeled nuclei during C. elegans embryogenesis.
    Downloads: 12 This Week
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  • 11

    AMOS

    AMOS is a collection of tools for genome assembly

    AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.
    Downloads: 10 This Week
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  • 12

    dna-bison

    Bisulfite alignment On Nodes of a cluster

    Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the development on...
    Downloads: 2 This Week
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  • 13
    This space is not maintained anymore. If you want to get the latest updates on fpocket refer to https://github.com/Discngine/fpocket. Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
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    Downloads: 19 This Week
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  • 14
    SunlightCBM is a suite of perl scripts for constraint-based modelling and flux-balance analysis in metabolic networks.
    Downloads: 0 This Week
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  • 15
    MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.
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    Downloads: 99 This Week
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  • 16
    LutefiskXP is ANSI C compliant software used to perform de novo peptide sequencing from tandem mass spectra.
    Downloads: 1 This Week
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  • 17
    The transcriptome analyser project aims to provide tools to determine and document all the transcribed parts of a genome. The transcribed parts are defined by analysing experimental evidence, like expressed sequence tags (EST) and other mRNA sequences.
    Downloads: 0 This Week
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  • 18
    Similarity / dissimilarity measures for community ecologists, and palaeontologists.
    Downloads: 0 This Week
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  • 19
    This tool is designed to solve generalized pattern matching problem, by which we only find a set of sub-patterns, ignoring the gaps in between the sub-patterns. This tool is extremely fast and also has good tolerance to errors.
    Downloads: 1 This Week
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  • 20
    LIGR Assembler is a sequence assembly program. It was derived from TIGR Assembler and addresses some of TIGR Assembler's shortcomings. See the CHANGES file for details.
    Downloads: 0 This Week
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  • 21
    An efficient implementation of the Smith-Waterman algorithm that takes advantage of SIMD instruction sets in modern CPUs. The Smith-Waterman algorithm is used for sequence alignment in bioinformatics.
    Downloads: 0 This Week
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  • 22
    CellMC is a multi-platform XSLT-based SBML compiler producing executable SSA models based on the optimised direct method.
    Downloads: 0 This Week
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  • 23
    Neurospaces is a development center for tools in computational neuroscience. See http://www.neurospaces.org/
    Downloads: 0 This Week
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  • 24
    Using the CUDA API this project modifies the AutoDock software to run in parallel on NVIDIA GPUs. Users will be able to download and compile the code and use AutoDock on CUDA capable Graphics Cards. Autodock is located at http://autodock.scripps.edu/
    Downloads: 0 This Week
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  • 25
    Shell tools for Newick-fromatted trees
    Downloads: 0 This Week
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