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Showing 4 open source projects for "stochastic processes"

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    STochastic Engine for Pathway Simulation
    Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS
    8 Reviews
    Downloads: 0 This Week
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  • 2

    Virus QSP Modeling

    C++ and Python code for simulating RNA virus replication

    Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files.
    Downloads: 0 This Week
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  • 3

    simbTUM

    Simulation of stochastic processes and ODE models in biology.

    SIMulation of Biological systems (developed at the TU Munich) This program allows to define ODE-models or stochastic compartemental models of biological processes, to simulate, to fit data and to do some statistics (fitting and statistics for deterministic models only).
    Downloads: 0 This Week
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  • 4
    The Hybrid Calculus of Wrapped Compartments is a language for the modelling of biological processes; it combines the precision of a stochastic approach with the efficiency of a ODE-based one. HCWC-sim is a OCaml implementation of the HCWC calculus.
    Downloads: 0 This Week
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