Showing 14 open source projects for "program in basic"

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    XLibraryDisplay

    XLibraryDisplay

    A sequence analysis tool for protein engineering

    XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing. Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016 Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s
    Downloads: 9 This Week
    Last Update:
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  • 2
    Lipid Reporter

    Lipid Reporter

    Modifies csv files with a range of user defined filters.

    ** Updated for Windows 10** Lipid Reporter takes your plain old Progenesis QI search exports and allows you to manipulate them in a quick, safe, predictable way. Now with better support for Progenesis QI grouped output! Why muddle things up with Excel? Use Lipid Reporter instead. The supplied filters are all about Lipids. Add the category names, reject Ids that our outside of your favourite retention time range and lots more! This program is not produced by Nonlinear Dynamics...
    Downloads: 0 This Week
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  • 3
    Finding DNA Repeats by RFRE

    Finding DNA Repeats by RFRE

    RFRE is a tool to find DNA repeats (tandem and short)

    ... Regular Expression Tool Regular Expression for Protein Motif Search and SSR sequence. https://sourceforge.net/projects/rfret/files/RFRE122019.exe/download https://www.preprints.org/manuscript/201910.0249/v1 https://sites.google.com/must.edu.eg/finding-dna-repeats/home ---------------------------------------------- *****Very important program must be downloaded before you run the EXE FILE OF RFRE***** 1-VB6 Runtime Plus 2.2.exe , https://sourceforge.net/projects/vb6extendedruntime/
    Downloads: 0 This Week
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  • 4

    SpectralWorks

    View, manipulate, analyze (LS fit, SVD, FT), and make figs of, spectra

    Program for viewing, editing, manipulating, and analyzing absorbance spectra. Simple arithnetic includes making linear combinatins of up to 10 spectra. Advanced functions include fitting spectra as LC of standard basis spectra, singular value decomposition, Fourier transform, differentiation, integration, global fitting of 3D titration and kinetic data. Graphics features allow composing Figures and export to postscript files which can be converted to pdf, imported into photoshop...
    Downloads: 8 This Week
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  • 5

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    ... Claudia Adams Barr Program in Innovative Basic Cancer Research and NIH/NHGRI to develop MAGeCK.
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    Downloads: 189 This Week
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  • 6
    MGF 2 FOR-JSON

    MGF 2 FOR-JSON

    Conversion of MGF files to JSON format

    Want to convert an MGF file to JSON format? This is the app for you, especially if you want to use the JSON file in the FOR-IDENT search program. If you don't know what MGF file, JSON format, FOR-IDENT search program is then this isn't the app for you. Happy conversion!
    Downloads: 1 This Week
    Last Update:
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  • 7
    PDBManip

    PDBManip

    PDBManip is a free program for editing PDB (Protein Data Bank) Files

    PDBManip is a free program for editing and manipulating PDB (Protein Data Bank) files. It has a graphical user interface and it is provided as an executable file for running on Windows® operating systems. There is a bunch of free programs on the internet for the same purpose. What discriminate between PDBManip and those programs is that PDBManip uses AngelScript language which is very similar to C/C++ language, to write scripts to do our editing tasks. I know that the text-manipulation script...
    Downloads: 0 This Week
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  • 8
    Identikit
    A basic and easy java program to make black and white identikit drawing ,with a library of face elements that you can also modify and expand without limit !Source code available. Also available a very rough base for a 3D construction of the face.
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    Downloads: 2 This Week
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  • 9
    Visual Blast

    Visual Blast

    GUI to accelerate protein and nucleotide BLAST analysis

    BLAST (Basic Local Alignment Search Tool) is a popular program that retrieves a library of sequences that resemble the query. The major problem experienced by new users of BLAST revolves around constructing syntactically and semantically correct command line, getting input files into acceptable formats and assessing the output. Visual BLAST is a Graphical User Interface written in C# and it was developed to simplify the parameters setting for BLAST searches. Visual BLAST aims to make BLAST...
    Downloads: 0 This Week
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  • 10

    fqzcomp

    A fastq compression program

    Fqzcomp is a basic fastq compressor, designed primarily for high performance. Despite that it is comparable to bzip2 for compression levels.
    Downloads: 0 This Week
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  • 11

    Pysimony

    A Pythonic Implementation of Parsimony Inference of Phylogeny

    UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An unlikely-to-be-the-most...
    Downloads: 0 This Week
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  • 12
    CNViewer

    CNViewer

    CNViewer shows CNV and LOH data in affected and unaffected individuals

    CNViewer is designed to allow the visual comparison of copy number (CN state) and loss of heterozygosity (LOH) data from Affymetrix SNP 6.0 microarrays between affected and unaffected members of a pedigree. The program aims to allow the identification of regions where the values of either the CN state or the LOH scores are the same in all the affected individuals, but none of the unaffected individuals have the same value. As well as visualising the CN state and LOH data, the program will also...
    Downloads: 0 This Week
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  • 13
    Program designed to extract scientific names stored in PDF documents located on a web address, entering data into a table with Darwincore format. Additionally this application uses the "FindIT" web service located at http://www.ubio.org.
    Downloads: 0 This Week
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  • 14
    Protein Mass Spectrometry: cprobid is a software for identification peptides from MS/MS spectra. The output of this program is compartable with TransProteomic Pipeline software package (sashimi project).
    Downloads: 0 This Week
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