Showing 12 open source projects for "g-bot"

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  • 1
    Gemi

    Gemi

    PCR primers / probes design from multiple & degenerate sequences

    ...https://sites.google.com/view/hsa23/ Gemi, an automated, fast, and easy-to-use bioinformatics tool with a user-friendly interface to design primers and probes for polymerase chain reaction (PCR). Gemi accepts multiple aligned and long DNA and RNA sequences with degenerate nucleotide (non-A/C/G/T bases). Gemi can be used for quantitative, real-time and conventional PCR (qPCR, rt-PCR, etc.), and Sanger sequencing. Gemi can parse large dataset of sequences efficiently. Python codes can be supported upon request. Article: Gemi: PCR primers prediction from multiple alignments Comparative and functional genomics 2012;2012:783138 DOI: https://doi.org/10.1155/2012/783138 PMID: https://www.ncbi.nlm.nih.gov/pubmed/23316117 PMCID: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3535827/
    Downloads: 0 This Week
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  • 2

    DuranDuranbot

    Teachable/trainable artificially intelligent music bot

    A teachable/trainable artificially intelligent music bot fundamentally inspired by how the new wave band Duran Duran composes music. This program utilizes many algorithmic/AI techniques/processes, including machine learning; which allow you to teach/train it to compose music which you prefer... and the technique which is the foundation of the design of DuranDuranbot, which was directly inspired by how Duran Duran writes music........
    Downloads: 0 This Week
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  • 3
    Kalibr Allan

    Kalibr Allan

    IMU Allan standard deviation charts

    ...These plots are analyzed to determine noise density and random walk parameters for both gyroscopes and accelerometers. The repository also includes example data and plots from real sensors such as the XSENS MTI-G-700, Tango Yellowstone Tablet, and ASL-ETH VI-Sensor, providing reference points for interpretation.
    Downloads: 2 This Week
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  • 4
    Simd

    Simd

    High performance image processing library in C++

    ...The Simd Library has C API and also contains useful C++ classes and functions to facilitate access to C API. The library supports dynamic and static linking, 32-bit and 64-bit Windows, Android and Linux, MSVS, G++ and Clang compilers, MSVS project and CMake build systems.
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    Downloads: 15 This Week
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  • 5
    Jenetics: Java Genetic Algorithm Library
    The source code has been migrated and is now hosted on Github: https://github.com/jenetics/jenetics Jenetics is an advanced Genetic Algorithm, Evolutionary Algorithm and Genetic Programming library, respectively, written in modern day Java. It is designed with a clear separation of the several algorithm concepts, e. g. Gene, Chromosome, Genotype, Phenotype, Population and fitness Function. Jenetics allows you to minimize or maximize the given fitness function without tweaking it. In contrast to other GA implementations, the library uses the concept of an evolution stream (EvolutionStream) for executing the evolution steps. Since the EvolutionStream implements the Java Stream interface, it works smoothly with the rest of the Java Stream API. ...
    Downloads: 0 This Week
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  • 6
    MyTinySTL

    MyTinySTL

    Achieve a tiny STL in C++11

    This is a tinySTL based on C++11, which is my first project for practice. I use the Chinese documents and annotations for convenience, maybe there will be an English version later, but now I have no time to do that yet. Now I have released version 2.0.0. I have achieved the vast majority of the containers and functions of STL, and there may be some deficiencies and bugs. From version 2.x.x, the project will enter the stage of long-term maintenance, i.e., I probably will not add new content...
    Downloads: 0 This Week
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  • 7

    detectMITE

    Detection of Miniature Inverted Repeat Transposable Elements

    detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. ...
    Downloads: 2 This Week
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  • 8
    ...This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY. In case you use the package in your work, we do appreciate a citation to the publications below. Citation: Yadav B, Peddinti G, Pemovska T, Khan SA, Szwajda A, Tang J, Wennerberg K and Aittokallio T. From drug response profiling to target addiction scoring in cancer cell models. (Submitted)
    Downloads: 0 This Week
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  • 9

    detectIR

    Detection of Perfect and Imperfect Inverted Repeats

    detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual Please visit the Wiki page of this website. [4] detectIR Q&A For Q&A, please visit the Blog page of this website...
    Downloads: 1 This Week
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  • 10

    Approximate Subgraph Matching Algorithm

    Approximate Subgraph Matching Algorithm for Dependency Graphs

    ...We further designed an approximate subgraph matching (ASM) algorithm that is capable of detecting approximate subgraph matching based on a subgraph distance. Assume that the graph G and the subgraph Gs have m and n vertices, and km and kn edges respectively, the total worst-case algorithm complexity is O(m^n * n(n-1)/2 * km * log m). This Java implementation implements our ASM algorithm. See README file: https://sourceforge.net/projects/asmalgorithm/files/ If you use our ASM implementation to support academic research, please cite the following paper: Haibin Liu, Lawrence Hunter, Vlado Keselj, and Karin Verspoor. ...
    Downloads: 0 This Week
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  • 11
    This is a fully STL-compliant C++ map/set/multimap/multiset implementation for g++ using an AVL tree instead of a Red-Black tree (that is present in current libstdc++).
    Downloads: 0 This Week
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  • 12
    Path Partitioner

    Path Partitioner

    Finds bad examples for the local search Path Partitioning algorithm

    ...Requirements: Microsoft Automatic Graph Layout http://research.microsoft.com/en-us/projects/msagl/ Gurobi Optimizer http://www.gurobi.com/ Permutations, Combinations, and Variations using C# Generics http://www.codeproject.com/Articles/26050/Permutations-Combinations-and-Variations-using-C-G
    Downloads: 0 This Week
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