Search Results for "web-based" - Page 4
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Showing 331 open source projects for "web-based"
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detectMITE
Detection of Miniature Inverted Repeat Transposable Elements
detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. ... -
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Hyacc is an efficient and practical Yacc/Bison-compatible full LR(1)/LALR(1)/LR(0) and partial LR(k) parser generator in ANSI C based on Knuth and Pager's LR(1) algorithms. Generated parser can be used in open-source or commercial software.
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We developed a systematic algorithmic solution for quantitative drug sensitivity scoring (DSS), based on continuous modeling and integration of multiple dose-response relationships in high-throughput compound testing studies. License: The DSS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well. ...
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React Fiber Architecture
A description of React's new core algorithm, React Fiber
...Rather than being a traditional code library, it serves as an educational deep dive into how React manages updates, scheduling, and reconciliation under the hood. The document explores how Fiber replaces the older stack-based reconciliation algorithm with a more flexible system that breaks rendering work into incremental units. This enables advanced features such as interruptible rendering, prioritization of updates, and smoother user interfaces during complex operations. It also introduces the concept of fibers as data structures representing units of work that can be paused, resumed, or reused. ... -
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tracking.js
A modern approach for Computer Vision on the web
...The package includes an initial version of the project you'll be working with. While you're working, you'll need a basic HTTP server to serve your pages. Test out the web server by loading the finished version of the project. The main goal of tracking.js is to provide those complex techniques in a simple and intuitive way on the web. We believe computer vision is important to improve people's life, bringing it to the web will make this future a reality a lot faster. -
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Colibri - The ENVI / IDL Code Library
A collection of well documented ENVI / IDL algorithms and applications
...The code is organized in a hierarchical way. At the lowest level, common code performing all kinds of basic functionality is available to the higher levels, i.e. classes and applications. Classes are object based functionalities performing more specific tasks. Both common code and classes are the building blocks for the applications which perform well delineated tasks. All common code, classes and applications are well documented. The complete set of code and documentation are available to the remote sensing community. ENVI/IDL code developers and remote sensing researchers are requested to actively contribute to this ENVI/IDL Code Library in order to obtain a solid reference of user developed applications for the remote sensing community. -
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An open-source implementation of our network-based target deconvolution approach, named target addiction score (TAS). License: The TAS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well.
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Opt4J
Modular Java framework for meta-heuristic optimization
...For this purpose, Opt4J relies on a module-based implementation and offers a graphical user interface for the configuration as well as a visualization of the optimization process. -
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bs
A B-tree based sequence library.
BS is a data structures library. It features fixed data size, random access sequences. The sequences are constructed over B-trees. Complexity for most single item operations is about O(logN). -
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Secciones
Software for calculating geometric properties of cross sections
Software for calculating geometric properties of cross sections and polygons. Calculates: area, moments of inertia, product of inertia, radius of gyration, section modulus, among others. It also supports import and export of CSV, JSON and DXF files. Able to do geometric transformations and 2D and 3D visualization of the cross sections. -
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Jafaran
Fast and more random implementations of java.util.Random.
...The names of implementations contain "Conc" (for concurrent) if they are thread-safe and non-blocking, or "Seq" (for sequential) if they are not thread-safe. Also provides an implementation of Ziggurat algorithm (based on J. A. Doornik paper, 2005), used by nextGaussian() methods of the provided implementations. Requires Java 5 or later. Also available on github since 2015/12/13: https://github.com/jeffhain/jafaran Principal classes: - Implementations using Mersenne-Twister algorithm (good pseudo-randomness): MTSyncRNG MTSeqRNG - Implementations using Marsaglia Xor-Shift (fast): MXSIntSeqRNG (32 bits) MXSLongSeqRNG (64 bits) (nextLong() faster, larger period) - Ziggurat: Random-based implementation of Ziggurat algorithm. -
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The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
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A P2P overlay construction toolkit, which supports routing algorithm researchers in addition to application developers. It provides multiple routing (DHT) algorithms such as Chord, Kademlia, Koorde, Pastry and Tapestry, and a distributed environment emu
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SteppedStateMachine
Creates and operates a stepped state machine
...Because of this, no data, e.g. state data, can be stored between executions. Instead, any such data must be stored in persistent storage between executions. This permits operation of the state machine as a CGI program in a web server. A WSGI or fastCGI or other such web server is not required. Received symbols may be received from sources outside the state machine, or may be generated internally by the state functions. -
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TreeLayout
Efficient and customizable TreeLayout Algorithm in Java, for NetBeans
Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast. Downloads are available at https://sourceforge.net/projects/treelayout/files/. For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/. -
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Generic simple and efficient Fast Fourier Transforms (FFT) implementation using policy-based design and template metaprogramming in C++
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iMet-Q (intelligent Metabolomic Quantitation) is an automated tool with friendly user interfaces for quantifying metabolites in full-scan liquid chromatography-mass spectrometry (LC-MS) data. It has a complete quantitation procedure for noise removal, peak detection and peak alignment. In addition to accurate quantitation, iMet-Q provides the charge states and isotope ratios of detected compounds. It accepts input data in netCDF, mzXML, and mzML format and exports quantitation results in csv...
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MassWiz
Proteomics MS/MS database search engine
Open Source MS/MS algorithm with integrated target-decoy based FDR. Reference- http://pubs.acs.org/doi/abs/10.1021/pr200031z , Check out the wiki site for help and support - https://sourceforge.net/apps/mediawiki/masswiz/index.php?title=Main_Page -
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Tetris Puzzle Solver
Fills a rectangle using given tetris shapes
Fills a rectangle using given tetris shapes (tetraminos) using an optimized brute force algorithm. A puzzle can have many different solutions; this solver will stop at the first one. Not all puzzles are solveable. Created to solve the annoying tetris puzzles in The Talos Principle and Sigils of Elohim. -
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http://www.filehelpers.net The FileHelpers are an easy to use .NET library written in C#. Is designed to read/write data from flat files with fixed length or delimited records (CSV). Also has support to import/export data from different data storages (Excel, Access, SqlServer) Code on GitHub: https://github.com/MarcosMeli/FileHelpers
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MDA
Molecular Dynamics Analyzer (MDA)
MDA is a 3D single-particle tracking software that explicitly addresses fluorescence microscopy experiments deep in living specimens. It is capable of minimizing the systematic error that occurs with astigmatism-based 3D techniques owing to the aberrations induced by the refractive index mismatch. In contrast to existing techniques, the method determines the aberration directly from the acquired 2D image stream by exploiting the inherent particle movement and the redundancy introduced by the astigmatism. It does not require additional experimental effort for the user and imaging can directly be started once interesting regions in the sample have been identified. ... -
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Javascript-Voronoi
JS implementation of Fortune's algorithm to compute Voronoi cells
...With this library you can feed a set of sites (points) and compute their Voronoi cells – the partition of the plane into regions closest to each site – in O(n log n) time. It’s especially useful in web UIs, visualizations, interactive maps, and generative-art contexts where you need dynamic tessellations or diagrammatic layouts. The library exposes API functions for computing cells, retrieving neighbors, and drawing results into canvas or SVG. Because it is pure JavaScript and self-contained, it integrates easily with browser or Node.js applications without heavy dependencies. ... -
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detectIR
Detection of Perfect and Imperfect Inverted Repeats
detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. -
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Java CoreWars Evolver
A Java based, pMars compatible, CoreWars simulator with GA
A Java based, pMars compatible, CoreWars simulator with Genetic Algorithm warrior evolver functionality. Java 8 is needed. See [Wiki:Tutorial] -
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