Search Results for "parallel"
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Showing 27 open source projects for "parallel"
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PANDA
A comprehensive and flexible quantification tool for proteomics data
...On the levels of spectra, peptides and proteins, PANDA works out a few quantitative filters and new scores for quantification confidence. Third, PANDA is designed for processing proteomics big data in parallel. -
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Evolutionary Computation Framework
C++ framework for application of any type of evolutionary computation.
ECF is a framework intended for application of any type of evolutionary computation (GA/GP, DE, Clonalg, ES, PSO, ABC, GAn, local search...). It offers simplicity for the end-user (parameterless usage, tutorial) and customization for experienced EC practicioners. -
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Thrust
The C++ parallel algorithms library
Thrust is the C++ parallel algorithms library which inspired the introduction of parallel algorithms to the C++ Standard Library. Thrust's high-level interface greatly enhances programmer productivity while enabling performance portability between GPUs and multicore CPUs. It builds on top of established parallel programming frameworks (such as CUDA, TBB, and OpenMP). -
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CountBitsSet
minimal benchmark code for Counting Set Bits (ones) in an Integer
I was curious how much better the Algorithms, pointed out by BitTwiddling Hacks, perform than a simple Lookup Table approach... Now I think, perhaps my little investigation is interesting for others too... PS: the parallel counting Algo is about 35% faster on average on my computers than a simple LUT based solution. Also this shows nicely how different a human brain compatible solution is to a binary machine optimal solution :-) In the meantime I added other Algorithms beside countbisset (hamming weight): ceil(log2()) + floor(log2()), bitreverse, ... ... -
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PMCGPU
Parallel simulators for Membrane Computing on the GPU
Membrane Computing is a new research area (within Natural Computing) that aims to provide computing devices abstracted from the functioning and structure of living cells. These devices are called P systems. The objective of this project (PMCGPU) is to bring together all the researchers working on the development of parallel simulators for P systems, specially those using the GPU (e.g. CUDA, OpenCL, etc). Other parallel platforms are also welcome (multicore and manycore, FPGAs, etc). This project has been initiated by the Research Group on Natural Computing (Department of Computer Science and Artificial Intelligence, University of Seville). PMCGPU was born inside the P-Lingua project, of the same research group. ... -
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Kalibr Allan
IMU Allan standard deviation charts
kalibr_allan is a utility repository that provides scripts and tools for calculating IMU noise parameters for use in Kalibr and other IMU filtering systems. While manufacturers typically provide “white noise” values in IMU datasheets, the bias instability and random walk parameters must be determined experimentally. This project enables users to compute those values using Allan variance analysis from recorded IMU data. The workflow involves recording IMU measurements with the device... -
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FastFlow: programming multi-core
Pattern-based multi/many-core parallel programming framework
FastFlow is a C/C++ programming framework supporting the development of pattern-based parallel programs on multi/many-core, GPUs and distributed platforms. FastFlow run-time is built upon non-blocking threads and lock-free queues. Thanks to its very efficient CAS-free communication/synchronization support (e.g. few clock cycles core-to-core latency), FastFlow effectively supports the exploitation of fine grain parallelism, e.g. parallel codes managing very high frequency streams on commodity multi-core. ... -
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SPar: Stream Parallelism in Multi-Cores
An Embedded C++ Domain-Specific Language
SPar is an internal C++ Domain-Specific Language (DSL) suitable to model and implement classical stream parallel patterns. The DSL uses standard C++ attributes to introduce annotations tagging the notable components of stream parallel applications: stream sources and stream processing stages. Latest version can be downloaded from the SVN using the following command: svn checkout svn://svn.code.sf.net/p/spar-dsl-compiler/svn/ spar -
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Genetic Programming Classifier is a distributed evolutionary data classification program. It uses the ensemble method implemented under a parallel co-evolutionary Genetic Programming technique.
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Bat2015
Bachelor of Science (Informatik)
...With a focus on the MILP methods we implement a load balancing and speed up the solving process in a multiplicative way. Sometimes we have super-linear speedup with a small set of hardware. With a splitting of problems, parallel computing and distributing the actual best solution to all running processes we solve CBP much faster than a sequential processing can do. -
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GTkNN
GPU-based Textual kNN (GT-kNN)
The following code is a parallel kNN implementation that uses GPUs for the high dimensional data in text classification. You can use it to classify documents using kNN or to generate meta-features based on the distances between a query document and its k nearest neigbors -
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SWAPHI-LS: Alignment on Xeon Phi Cluster
Smith-Waterman long DNA sequence alignment on Xeon Phi clusters
The first parallel Smith-Waterman algorithm exploiting Intel Xeon Phi clusters to accelerate the alignment of long DNA sequences. This algorithm is written in C++ (with a set of SIMD intrinsic extensions), OpenMP and MPI. The performance evaluation revealed that our algorithm achieves very stable performance, and yields a performance of up to 30.1 GCUPS on a single Xeon Phi and up to 111.4 GCUPS on four Xeon Phis sharing a host. -
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CUSHAW2: Parallel Gapped Read Alignment
One of the leading short-/long-read aligner to large genomes
...Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads. -
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Genetic Programming in OpenCL is a parallel implementation of genetic programming targeted at heterogeneous devices, such as CPU and GPU. It is written in OpenCL, an open standard for portable parallel programming across many computing platforms.
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ParaBWT - parallel BWT construction
a parallel and space-efficient Burrows-Wheeler transfrom constructor
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Distributed Multithread Apriori (DMTA)
A parallel implementation using MPI and OpenMP to Apriori algorithm
DMTA (Distributed Multithreaded Apriori) is a parallel implementation of Apriori algorithm, which exploits the parallelism at the level of threads and processes, seeking to perform load balancing among the cores. Was implemented in C++ language, using the parallelization libraries OpenMP and MPI. The algorithm was generated as a result of a project developed by André Camilo Bolina, under the guidance of teachers Marluce Rodrigues Pereira, Ahmed Ali Abdalla Esmin and Denilson Alves Pereira, in Department of Computer Science at Federal University of Lavras. ... -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
...However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive parallel processing (MPP) systems. -
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parFE is fully-parallel high-performance finite element code targeted to the modeling of trabecular bones in humans. It employs scalable multigrid solvers for efficient solutions on massively parallel computers.
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Project provides a set of concurrent building blocks (Java & C/C++) that can be used to develop parallel/multi-threaded applications. Components are grouped into 4 categories: 1.Data Structures 2. Parallel Patterns 3.Parallel functions 4.Atomics and STM
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Tina's Random Number Generator Library (TRNG) is a state of the art C++ pseudo-random number generator library for sequential and parallel Monte Carlo simulations.
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gpufsknn
A GPU-based efficient data parallel formulation of the kNN problem
A GPU-based efficient data parallel formulation of the k-Nearest Neighbor (kNN) search problem which is a popular method for classifying objects in several fields of research, such as- pattern recognition, machine learning, bioinformatics etc. -
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"UltraQueue" is a library (DLL) project, written in C++. This library is intended to be used for very fast temporary data storage, aquired by any possible source (File, Serial Port, ...). Users can create multiple queues of differrent sizes & types
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Implementation of paralell partitioning algorithms achieving an optimal number of comparisons. See L. Frias and J. Petit. Parallel partition revisited. http://dx.doi.org/10.1007/978-3-540-68552-4_11 for further reference.
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Sequential and parallel implementation of string quicksorts(-select) . Articles: On the number of string lookups in BSTs (and related algorithms) with digital access/ Combining digital access and parallel partition for quicksort and quickselect.
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This is implementation of parallel genetic algorithm with "ring" insular topology. Algorithm provides a dynamic choice of genetic operators in the evolution of. The library supports the 26 genetic operators. This is cross-platform GA written in С++.
