Showing 40 open source projects for "method"

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  • 1
    bild

    bild

    Image processing algorithms in pure Go

    A collection of parallel image processing algorithms in pure Go. The aim of this project is simplicity in use and development over absolute high performance, but most algorithms are designed to be efficient and make use of parallelism when available. It uses packages from the standard library whenever possible to reduce dependency use and development abstractions. All operations return image types from the standard library. Package convolution provides the functionality to create and apply a...
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  • 2
    Gait Tracking With x-IMU

    Gait Tracking With x-IMU

    Foot tracking algorithm demonstrated in Seb Madgwick's 3D Tracking

    This repository provides the source code for a foot-tracking algorithm using an inertial measurement unit (IMU) attached to the foot, as demonstrated in Seb Madgwick’s “3D Tracking with IMU” video (March 2011). The method performs dead reckoning to integrate foot motion and corrects for drift at each foot strike (when the foot touches the ground) to reset error accumulation. The algorithm was part of gait analysis research, estimating foot trajectories in 3D over time. The repo is marked “no longer maintained,” and has been superseded by newer versions of Gait-Tracking. ...
    Downloads: 3 This Week
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  • 3
    This is a method for identifying graphs using MD5 hashing. It can be used for graph equality comparisons and to facilitate graph isomorphism testing. The graphs can be labeled or unlabeled.
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  • 4
    C-squares

    C-squares

    Concise spatial query and representation system (c-squares)

    C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ .
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  • 5
    java-string-similarity

    java-string-similarity

    Implementation of various string similarity and distance algorithms

    ...The "cost" column gives an estimation of the computational cost to compute the similarity between two strings of length m and n respectively. If the alphabet is finite, it is possible to use the method of four russians (Arlazarov et al. "On economic construction of the transitive closure of a directed graph", 1970) to speedup computation. This was published by Masek in 1980 ("A Faster Algorithm Computing String Edit Distances").
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  • 6
    FuzzyWuzzy

    FuzzyWuzzy

    Fuzzy string matching in Python

    We’ve made it our mission to pull in event tickets from every corner of the internet, showing you them all on the same screen so you can compare them and get to your game/concert/show as quickly as possible. Of course, a big problem with most corners of the internet is labeling. One of our most consistently frustrating issues is trying to figure out whether two ticket listings are for the same real-life event (that is, without enlisting the help of our army of interns). To pick an example...
    Downloads: 1 This Week
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  • 7
    DEBay

    DEBay

    Deconvolutes qPCR data to estimate cell-type-specific gene expression

    DEBay: Deconvolution of Ensemble through Bayes-approach DEBay estimates cell type-specific gene expression by deconvolution of quantitative PCR data of a mixed population. It will be useful in experiments where the segregation of different cell types in a sample is arduous, but the proportion of different cell types in the sample can be measured. DEBay uses the population distribution data and the qPCR data to calculate the relative expression of the target gene in different cell types in...
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  • 8
    Linear Program Solver (Simplex)
    Linear Program Solver (Solvexo) is an optimization package intended for solving linear programming problems. The main features of the Solvexo are: · Solvexo solver is based on the efficient implementation of the simplex method (one or two phases); · Solvexo provides not only an answer, but a detailed solution process as a sequence of simplex matrices, so you can use it in studying (teaching) linear programming. · Solvexo provides a solution with the graphic method for problems with tow variables. · This updated version includes two languages English and French. ...
    Downloads: 2 This Week
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  • 9
    TSP Solver and Generator

    TSP Solver and Generator

    Generate and solve Travelling Salesman Problem tasks

    ...The result can be printed or saved as PDF, HTML, or ODF. TSPSG may be useful for teachers to generate test tasks or just for regular users to solve TSPs. Also, it may be used as an example of using Branch and Bound method to solve a particular task.
    Downloads: 3 This Week
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  • 10
    EntOpt Layout

    EntOpt Layout

    Relative entropy optimization network layout plugin

    The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu.
    Downloads: 0 This Week
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  • 11
    Genetic Programming Classifier is a distributed evolutionary data classification program. It uses the ensemble method implemented under a parallel co-evolutionary Genetic Programming technique.
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  • 12

    owl reasoning over big biomedical data

    A OWL reasoning framework for the analysis of big biomedical data

    A general OWL reasoning framework for the analysis of big biomedical data and implement a MapReduce-based property chain reasoning prototype system. OWL reasoning method is ideally suitable for problems involved complex semantic associations because it is able to infer logical consequences based on a set of asserted rules or axioms. MapReduce framework isused to solve the problem of scalability. In our experiment, we focus on the discovery of associations between Traditional Chinese Medicine (TCM) and Western Medicine (WM).
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  • 13

    COPEread

    Connecting Overlapped Pair-End Reads

    COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang; Yingrui Li; Tak-Wah Lam; Ruibang Luo Bioinformatics (2012) 28(22): 2870-2874; doi: 10.1093/bioinformatics/bts563
    Downloads: 0 This Week
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  • 14

    MDA

    Molecular Dynamics Analyzer (MDA)

    ...It is capable of minimizing the systematic error that occurs with astigmatism-based 3D techniques owing to the aberrations induced by the refractive index mismatch. In contrast to existing techniques, the method determines the aberration directly from the acquired 2D image stream by exploiting the inherent particle movement and the redundancy introduced by the astigmatism. It does not require additional experimental effort for the user and imaging can directly be started once interesting regions in the sample have been identified. MDA is written in MATLAB and comes with a graphical user interface. ...
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  • 15
    Javascript-Voronoi

    Javascript-Voronoi

    JS implementation of Fortune's algorithm to compute Voronoi cells

    This repository implements Steven Fortune’s algorithm (sweep-line method) for generating Voronoi diagrams in JavaScript, providing a performant browser-side solution for computational geometry of planar point sets. With this library you can feed a set of sites (points) and compute their Voronoi cells – the partition of the plane into regions closest to each site – in O(n log n) time. It’s especially useful in web UIs, visualizations, interactive maps, and generative-art contexts where you need dynamic tessellations or diagrammatic layouts. ...
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  • 16

    OptimC

    OptimC - Optimization / Unconstrained Minimization Library in ANSI C

    OptimC is a C software package to minimize any unconstrained multivariable function. The algorithms implemented are Nelder-Mead,Newton Methods (Line Search and Trust Region methods), Conjugate Gradient and BFGS (regular and Limited Memory). Brent method is also available for single variable functions if the bounds are known. Update 06/09/2014 - Nonlinear Squares Implementation [Levenberg-Marquardt Method] Added. Documentation - http://code.google.com/p/optimc/
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  • 17
    IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
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  • 18

    drvq

    dimensionality-recursive vector quantization

    drvq is a C++ library implementation of dimensionality-recursive vector quantization, a fast vector quantization method in high-dimensional Euclidean spaces under arbitrary data distributions. It is an approximation of k-means that is practically constant in data size and applies to arbitrarily high dimensions but can only scale to a few thousands of centroids. As a by-product of training, a tree structure performs either exact or approximate quantization on trained centroids, the latter being not very precise but extremely fast. ...
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  • 19

    DDMTestbed

    An independent Data Distribution Management testbed

    DDMTestbed is a testbed that allows you to generate random instances and evaluate your proposed resolutive method measuring execution time, memory occupied and distance from the optimal solution. It has been written in C language.
    Downloads: 0 This Week
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  • 20
    IHC Profiler

    IHC Profiler

    A plugin for the quantitative analysis of Immunohistochemistry samples

    Identification and scoring of cancer markers by Immunohistochemistry has been shown to be of value in determining the aggressiveness of specific cancers, as well as in predicting patient outcome for many cancer types. Despite its routine clinical use, a problem with the standard scoring method is the inherent subjectivity and variability of purely visual inspection. To diminish this visual perception biasing, IHC profiler has been developed as a standard automated scoring tool. -x-x-x-x-x-x-x- Full Publication and Citation: Varghese F, Bukhari AB, Malhotra R, De A (2014) IHC Profiler: An Open Source Plugin for the Quantitative Evaluation and Automated Scoring of Immunohistochemistry Images of Human Tissue Samples. ...
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    Downloads: 188 This Week
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  • 21
    Programming Accessory Kit

    Programming Accessory Kit

    PAK is a collection of library code to handle the overhead of coding

    PAK is a collection of library code to handle the overhead of coding things like read-write locks, reflective multithreaded programming and simple file io. This is a java library collection, please see my API below...
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  • 22
    Linear Program Solver

    Linear Program Solver

    Solve linear programming problems

    Linear Program Solver (LiPS) is an optimization package oriented on solving linear, integer and goal programming problems. The main features of LiPS are: ● LiPS is based on the efficient implementation of the modified simplex method that solves large scale problems. ● LiPS provides not just an answer, but a detailed solution process as a sequence of simplex tables, so you can use it for studying/teaching linear programming. ● LiPS gives sensitivity analysis procedures, which allow us to study the behaviour of the model when you change its parameters, including: analysis of changes in the right sides of constraints, analysis of changes in the coefficients of the objective function, analysis of changes in the column/row of the technology matrix. ...
    Downloads: 21 This Week
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  • 23

    CSST

    Cascade and Sharing Survival Trees, an ensemble for survival analysis

    Cascading and Sharing Survival Trees (CSST) is a tree-based enseble that allows to efficiently analize survival data. It is a strightforward extension of the CS4 method for lifetime collections of data. The CSST software comes along with its companion the CSST Prediction tool, to use the ensemble prediction in everyday life. Please, refer to the user's manual for further information.
    Downloads: 0 This Week
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  • 24

    IDA (Java)

    Java implementation of the IDA

    Information Dispersal Algorithym (IDA) is a method to split a file f into n pieces in such a way that the file can be reconstructed from some predefined subsets of pieces. this is a Java implementation.
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  • 25

    Simplex Solver For PHP

    PHP class library for simplex method

    Resolve standard Maximization / Minimization problem in LP using Simplex Method. *Currently support maximization only.
    Downloads: 0 This Week
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