Search Results for "command line" - Page 4
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Showing 243 open source projects for "command line"
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msp
mathSuite Speed & Matrix Stream Processor
This program is fundamentally a short-sized version of my mathSuite program: https://sourceforge.net/projects/mathsuite/ It includes all the functionalities of MSCenv (mathSuite Calculus Environment), such as inline variables and functions (mainly thanks to ExprEval), which you can use to perform expensive complex computations and store their results into runtime variables. You can perform also every Linear Algebra Operations included in mathSuite with new optimizations. -
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Genetic Programming in OpenCL is a parallel implementation of genetic programming targeted at heterogeneous devices, such as CPU and GPU. It is written in OpenCL, an open standard for portable parallel programming across many computing platforms.
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DRAMMS
A Deformable Medical Image Registration Toolbox
...Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. It is fully-automatic --- takes two input images, and generates a registered image and (optionally) the deformation field. More information (installation, tutorial, manual, demonstration, FAQ, etc) can be found at http://www.rad.upenn.edu/sbia/software/dramms/ . -
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CUSHAW2: Parallel Gapped Read Alignment
One of the leading short-/long-read aligner to large genomes
CUSHAW2 is a fast and parallel gapped read alignment to large genomes, such as the human genome. The performance evaluation, by aligning simulated and real datasets to the human genome, shows that CUSHAW2 is consistently among the highest-ranked aligners in terms of alignment quality for both single-end and paired-end alignment, while demonstrating highly competitive speed. Furthermore, our aligner shows good parallel scalability with respect to the number of CPU threads. -
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BudgetedSVM
BudgetedSVM: A C++ Toolbox for Large-scale, Non-linear Classification
...BudgetedSVM trains models with accuracy comparable to LibSVM in time comparable to LibLinear, as it allows solving highly non-linear classi fication problems with millions of high-dimensional examples within minutes on a regular personal computer. We provide command-line and Matlab interfaces to BudgetedSVM, efficient API for handling large-scale, high-dimensional data sets, as well as detailed documentation to help developers use and further extend the toolbox. -
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SEO & SEM - Marketing Text Writer
Open Source SEO & SEM Text Creation Tools for free Article Writer
Open Source Tool for Search Engine Optimization (SEO & SEM) used for automatic content processing. These SEO Content Genrators and Article Writers based on Text... -
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Graphal
Graph algorithms interpreter, IDE, debugger, 3D visualizations.
Graphal is an interpreter of a programming language that is mainly oriented to graph algorithms. There is a command line interpreter and a graphical integrated development environment. The IDE contains text editor for programmers, compilation and script output, advanced debugger and visualization window. The progress of the interpreted and debugged graph algorithm can be displayed in 3D scene. -
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<... -
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ktree
clustering, machine learning, algorithms
This project has moved to github at http://lmwtree.devries.ninja. -
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This library implements a thread-safe skip list data structure - a kind of list with good insertion, deletion and searching performances. It uses Fred Fish's dbug library as internal tracing/debugging system. See the web site for more details.
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drvq
dimensionality-recursive vector quantization
drvq is a C++ library implementation of dimensionality-recursive vector quantization, a fast vector quantization method in high-dimensional Euclidean spaces under arbitrary data distributions. It is an approximation of k-means that is practically constant in data size and applies to arbitrarily high dimensions but can only scale to a few thousands of centroids. As a by-product of training, a tree structure performs either exact or approximate quantization on trained centroids, the latter... -
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Funnel Sort
command line sort utility
Moved to GitHub https://github.com/fedups A command-line utility to sort files. Funnel is a sort utility to sort files, large and small. It efficiently handles fixed length records and variable length records. Funnel easily handles ascii (readable) data and binary data. There are many more features in Funnel. It is easy to use and very fast. All documentation is on the Wiki. -
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DDMTestbed
An independent Data Distribution Management testbed
DDMTestbed is a testbed that allows you to generate random instances and evaluate your proposed resolutive method measuring execution time, memory occupied and distance from the optimal solution. It has been written in C language. -
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PPSeq: Parallel NGS Analysis
Parallel Processing for Next-Generation Sequencing (NGS) Analysis
High-throughput next generation sequencing (NGS) technology has quickly emerged as a powerful tool in many aspects of biomedical research. However, along with its rapid development, the data magnitude and analysis complexity for NGS far exceed the capacity and capability of traditional small-scale computing facilities, such as multithreading algorithms on standalone workstations. To address this issue, here we present a solution using the ever-increasing supply of processing power by massive... -
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gridrpcdm
Library implementing the GridRPC and GridRPC DM OGF stantards.
...It is completely modular and already supports middleware modules for DIET and Ninf, as well as data manager modules for iRods, OwnCloud, rsync, scp. The installation is made easy with cmake and testing examples can be launched in a one line command. -
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Dantzig-Wolfe Solver
An implementation of Dantzig-Wolfe decomposition built upon GLPK
An implementation of Dantzig-Wolfe decomposition built upon the GNU Linear Programming Kit. This is a command line tool for solving properly decomposed linear programs. There are several examples and some documentation to guide the use of this solver. Forked over to GitHub (see link). -
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I is a cross-platform programming language designed towards efficiency during development and at runtime.
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Vigenere Dictionary Attack
Vigenere brute force / dictionary cracking tool
This is a tool that uses a combination between a brute force and dictionary attack on a Vigenere cipher. At present, keys are generated using brute force (will soon try passwords generated from a dictionary first). Each key is then used to decode the encoded message input. The output is analysed and then put into a ranking table. Outputs will be ranked on a variety of factors (at present, only number of dictionary words in output are counted). For the future: Better key generation,... -
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libfgen
Library for optimization using a genetic algorithm or particle swarms
libfgen is a library that implements an efficient and customizable genetic algorithm (GA). It also provides particle swarm optimization (PSO) functionality and an interface for real-valued function minimization or model fitting. It is written in C, but can also be compiled with a C++ compiler. Both Linux and Windows are supported. -
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PopED (Population Experimental Design) is a software tool for computing optimal experimental designs. The software has been developed with an emphasis on drug trials based on population models (non-linear mixed effects models).
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tway
moved to https://github.com/sroycode/tway
Currently two way astar is implemented. For those interested I have uploaded a patch of this for pgrouting v1.05 moved to https://github.com/sroycode/tway -
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lpg_ptbr
The Linux Programmer's Guide em pt_BR
The Linux Programmer's Guide em português do Brasil -
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