Open Source Algorithms - Page 10

Wisconsin White Matter Hyperintensity Segmentation [W2MHS] and Quantification Toolbox is an open source MatLab toolbox designed for detecting and quantifying White Matter Hyperintensities (WMH) in Alzheimer’s and aging related neurological disorders. WMHs arise as bright regions on T2- weighted FLAIR images. They reflect comorbid neural injury or cerebral vascular disease burden. Their precise detection is of interest in Alzheimer’s disease (AD) with regard to its prognosis. Our toolbox provides a self-sufficient set of tools for segmenting these WMHs reliably and further quantifying their burden for down-processing studies.

The C++-programs simulate : Nondeterministic/Deterministic Multitape Turing & Post Machines, Universal Turing Machine, Turing Machine with faults, failures and recovery.

The ccgsl provides simple C++ wrappers for the GNU Scientific Library. It uses Java-like shared-pointer classes in place of structs to avoid direct memory allocation/freeing and to work better with the STL. It lets you construct functions for optimisation, root-finding and the like from C++ member functions, making it easier to integrate with existing C++ code. It also provides C++ exceptions.

detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual Please visit the Wiki page of this website. [4] detectIR Q&A For Q&A, please visit the Blog page of this website. [5] detectIR bug report You can report a bug as a Ticket request, or start a topic session in the Discussion webpage of this website. [6] Update history To see the update history, go to https://sourceforge.net/p/detectir/wiki/Update%20History/

detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectMITE user manual Please visit the Wiki page of this website. [4] detectMITE Q&A For Q&A, please visit the Blog page of this website. [5] Update history To see the update history, go to https://sourceforge.net/p/detectmite/wiki/UpdateHistory/

Pascal libraries and components. Library for: Matrix, Matrix Math, Math & statistic, CSV, URL, Counters, dir/file scanning, file/string/… utils, progress bar, … Components: DataList, Line oriented reports, Gauge, Syllable (Italian), …

libObfuscate 2.00 ISO C / open-source / system independent * Modern 256bit cryptography: AES, Anubis, Camellia, Cast-256, Clefia, FROG, Hierocrypt3, Idea-NXT, MARS, RC6, Safer+, SC2000, Serpent, Speed, Twofish, Unicorn-A, Wrapper * CSPRNG (based on AES) * Modern 512bit hashing: Grostl, Keccak, SHA2, Skein, Wrapper * Scrambling * Multi-layered obfuscation

A slightly reduced strength bulk encryption. In exchange for the reduced strength, you get the ability to rsync the encrypted files, so that local changes in the plaintext file will result in (relatively) local changes to the cyphertext file.

Axiom is a computer algebra system. It consists of an interpreter, a compiler and a library of algorithms. Axiom is an excellent research platform as well as a useful tool for scientific programming.

This CPU Benchmark is written in .NET C# and use the Linpack and Whetstone algorithm.

A .NET Library written in C# 2.0 for doing some mathematic operations as evaluating functions, plotting or finding roots. Visit the Project Web site at http://math-net.sourceforge.net.

Simulate 2D physics with my engine entirely made in JavaScript. Modify live existing scenarii or create your own from scratch with the live editor. Try it on the demo web site! :) Note : If you intend to download and use the sources as it is, you need to host it as scenario resquests are made in AJAX.

Generic merge sort, quick sort and insertion sort implementations written in C programming language.

solwing Curl(Curl(A))+gamma*A = f vector equation in 3D

Solution for UVa Online Judge's problem number 895 - Word Problem. This is the solution I uploaded, and it was accepted as valid.

A Collection of Useful C++ Classes for Digital Signal Processing This project has been moved to here: http://code.google.com/p/dspfilterscpp/

We have moved our project to github. https://github.com/saaddan/Compressed-Enhanced-Suffix-Array

Fully playable Java game demo illustrating basic game programming technics, such as sprite animation, pixmap fonts, time or frame related game loop, affine transformations, convolution filters, sound generation and playback...

Based on the introduction of Genetic Algorithms in the excellent book "Collective Intelligence" I have put together some python classes to extend the original concepts.

a framework library with a template method interface and inheritable classes for an executable process design which produces an executable which is both a GUI and a console application. It provides multi-threading for work items of the provider process .

spdict is a library of dictionary algorithms written in C++. It has support for sorted array, binary search tree, red-black tree, skip list, and balanced tree algorithms. Also include a cache class.

a sandbox for trying my engine ideas

It's an implementation of the A* algorithm together with a grid processor which pre-processes 8-bit bpm graphic files using a variable resolution and an SDL user interface to test it.

Java implementation of A* algorithm, that could be used in Roguelike games.

AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.