Search Results for "usearch"
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Showing 3 open source projects for "usearch"
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UStore
Multi-Modal Database replacing MongoDB, Neo4J, and Elastic
Multi-Modal Database replacing MongoDB, Neo4J, and Elastic with 1 faster ACID solution, with NetworkX and Pandas interfaces, and bindings for C 99, C++ 17, Python 3, Java, GoLang. -
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Genix: Bacterial Genome Annotation Pipel
A automated annotation pipeline for bacteria / archea genomes
Genix is an online automated pipeline for bacterial genome annotation that integrates the programs Prodigal, BLAST, RNAmmer, tRNAscan-SE, INFERNAL, ARAGORN and HMMER, and the databases Uniprot, Antifam and Rfam. -
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mubiomics
Scripts for processing next-gen sequencing data
A set of scripts (mostly python) for processing reads generated by the Roche 454 or Illumina next-gen sequencing platforms. Included are quality control, read demultiplexing and microbiome characterisation scripts for use with usearch, pplacer and RDP classifier. The package was used to produce the data presented in Smith et al. (2012) "The Cervical Microbiome over 7 Years and a Comparison of Methods for its Characterization".
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