A set of scripts (mostly python) for processing reads generated by the Roche 454 or Illumina next-gen sequencing platforms. Included are quality control, read demultiplexing and microbiome characterisation scripts for use with usearch, pplacer and RDP classifier.

The package was used to produce the data presented in Smith et al. (2012) "The Cervical Microbiome over 7 Years and a Comparison of Methods for its Characterization".

Project Activity

See All Activity >

Follow mubiomics

mubiomics Web Site

Other Useful Business Software
99.99% Uptime for MySQL and PostgreSQL Databases Icon
99.99% Uptime for MySQL and PostgreSQL Databases

Sub-second maintenance. 2x read/write performance. Built-in vector search for AI apps.

Cloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.
Start Free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of mubiomics!

Additional Project Details

Registered

2012-02-29
Report inappropriate content