Search Results for "sge"
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Showing 30 open source projects for "sge"
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SGE_GPU
Patch to SGE 2011.p1,Son of Grid Engine, multiple GPU, Linux
Patch to SGE 2011.p1, Son of Grid Engine 8.18, to enable multiple GPU scheduling. It schedules GPUs to jobs, or processes for MPI jobs(in file "environment" on work nodes). Recompile the source needed. Also, you need to set a consumable, named "ngpus". And assign value of it to each node. When submit GPU job, run: >qsub -l ngpus=1 ... -
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ASGARD
Metabolic reconstruction from DNA or protein sequences.
ASGARD is software for metabolic pathway reconstruction, but it can also generate other types of biological sequence annotation (EC and GO numbers, BLAST reports). This program is intended to be run in UNIX-like systems, and supports SGE or PBS. -
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The Community Scheduler Framework (CSF) is a set of Grid Services, implemented using the Globus Toolkit, which provides an environment for the development of metaschedulers that can dispatch jobs to resource managers such as LSF, SGE, PBS and Condor.
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Son of Grid Engine (SGE)
Community superset free distribution of gridengine/SGE batch system
Son of Grid Engine is a community continuation of the old Sun Grid Engine project. It aims to be a big superset of available free gridengine code and patches. The main site is currently https://arc.liv.ac.uk/trac/SGE/ and https://arc.liv.ac.uk/SGE/ but release files are inaccessible there and being hosted here. -
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SPANDx
Comparative analysis of haploid next-generation genome sequence data
...A presence/absence matrix is also generated to allow you to identify the core/accessory genome content across all your genomes. The outputs generated by SPANDx can be imported into PLINK for microbial genome-wide association study (mGWAS) analyses. SPANDx can utilise PBS, SGE or SLURM for resource management. SPANDx can also run directly on the command line if no resource manager is available. For the most up-to-date version of SPANDx, check us out on GitHub: https://github.com/dsarov/SPANDx -
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ANTS on CONDOR
Using buildtemplateparallel.sh from ANTS on Condor
...As creating an unbiased study-specific template with a large number of subjects is highly demanding in computational load, parallelization is implemented in ANTS's script "buildtemplateparallel.sh" for SGE, PBS and Apple XGrid, but not for Condor yet. This modification enables running buildtemplateparallel.sh from ANTS-1.9.v4 on HTCondor (http://research.cs.wisc.edu/htcondor/) environment. -
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FBSAT
An efficient analysis pipeline for family-based sequencing
Through our tool a user can perform the whole analysis parallelized on UNIX HPC systems controlled by SGE or PBS automatically. Non-bioinformatics researchers can easily and quickly identify variants that are potentially causing diseases while minimizing false positives and artifacts. -
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Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
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Ganglia Job Monarch
Batch system monitoring and archiving
Job Monarch is an addon to the Ganglia Monitoring System that provides batch job monitoring and archiving plus a graphical overview of clusters and assorted batch systems. Fully supported batch system: Torque, PBS and SLURM. Experimental: LSF, SGE -
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cZUI is a Zoomable User Interface framework, allowing the creation of zoomable interfaces in C++. It uses the scene graph concept, with the possibility of panning and zooming cameras on various parts of the scene. Multiple cameras can be painted on the same window, each with its own painting rectangle. Multiple demos and a tutorial are available.
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SGE-CIBERCOL
gestion información
Software de código abierto para la gestión de información y Análisis de Información dentro de las organizaciones -
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PHPQstat is a web interface that allows to connect to the useful commands of the Sun Grid Engine (SGE) batch queue system. With this interface, you can monitor your job status and your queues health at real time.
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Aplicação web usando flex + java. Trabalho desenvolvido para avaliação em disciplina do curso de pós graduação "Compoenentes Web" da Ruy Barbosa.
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This project is an attempt at generating a usable saved game editor for Sword of the Stars (currently version 1.8+), as well as defining the data structures therein.
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Un Pokémon-like orienté MMO, codé en Java, utilisant JOGL pour des graphismes 3D et 2D. Avancement disponible sur Twitter : http://twitter.com/#!/WilliwawCirse
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The Goal is create a Some Tools using libraries like Ogre3D, CEGUI, OpenAL, Bulleand others Neededt.
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ActionFolders are content-aware folders that allow you to orchestrate tasks based on file events. Whether you need automation, notification, workflow, or something more, ActionFolders are as flexible as your imagination.
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EGAL (Excelian Grid Abstraction Layer) uses the DRMAA 1.0 library to communicate with SGE. EGAL provides a common interface for software to communicate with any Grid. This is one of 3 modules, with the other two being for Platform and Datasynaps Grids.
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Projeto para discipina PCS2034 - Laboratório de engenharia de software SGE - Sistema Gerenciador de Eventos
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The Application Agent (AA) is a software providing the platform and mechanism for the distributed/parallel applications to interact and negotiate with the underlying grid resource infrastructure such as Condor and SGE on one-to-one and dynamic basis.
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The High Throughput Sequence Analysis Pipeline uses freely available bioinformatics tools from NCBI, Phylip, EMBOSS and clustalw to identify and group closely related DNA samples. It can be run on *Nix systems linearly or in parallel using the SGE.
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FedStage OpenDSP is an open implementation of SOAP Web Service multi-user access and policy-based job control using OGF DRMAA routines supported by distributed resource management systems like Sun Grid Engine (SGE), LSF, PBSPro, Torque or Condor.
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SGE (Serpent Game Engine - by Erico GR) is a simple but POWERFUL Java tool for creating 2D games in no time. You can use a rich Level Editor to build xml levels with many layers, objects and actors.
