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Showing 142 open source projects for "plant"
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The Powder Toy
Sandbox video game with a powerful physics engine
Have you ever wanted to blow something up? Or maybe you always dreamt of operating an atomic power plant? Do you have a will to develop your own CPU? The Powder Toy lets you to do all of these, and even more! The Powder Toy is a free physics sandbox game, which simulates air pressure and velocity, heat, gravity and a countless number of interactions between different substances! The game provides you with various building materials, liquids, gases and electronic components which can be used... -
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electricityMap
A real-time visualisation of the CO2 emissions of electricity
Real-time visualization of the Greenhouse Gas (in terms of CO2 equivalent) footprint of electricity consumption built with d3.js and mapbox GL. Real-time data is defined as a data source with an hourly (or better) frequency, delayed by less than 2hrs. It should provide a breakdown by generation type. Often fossil fuel generation (coal/gas/oil) is combined under a single heading like 'thermal' or 'conventional', this is not a problem. Citizens should not be responsible for the emissions... -
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CliMA Land
Everything within the Land model
CliMA Land is a next generation Land Surface Model (LSM) designed to use the broadly available remote sensing data as well as ground-based flux measurements. CliMA Land is a highly modular platform to promote research at different scales from tissue to organ, whole plant, and ecosystem. Therefore, we deliver CliMA Land via a patch of packages (also referred to as sub-modules) to reduce the time used to initialize a research project. As a result, the repository is more a collection of tutorials... -
Claims Processing solution for healthcare practitioners.Speedy Claims became the top CMS-1500 Software by providing the best customer service imaginable to our thousands of clients all over America. Medical billing isn't the kind of thing most people get excited about - it is just a tedious task you have to do. But while it will never be a fun task, it doesn't have to be as difficult or time consumimg as it is now. With Speedy Claims CMS-1500 software you can get the job done quickly and easily, allowing you to focus on the things you love about your job, like helping patients. With a simple interface, powerful features to eliminate repetitive work, and unrivaled customer support, it's simply the best HCFA 1500 software available on the market. A powerful built-in error checking helps ensure your HCFA 1500 form is complete and correctly filled out, preventing CMS-1500 claims from being denied.
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QOR
Libraries written in Go abstracting features needed for business apps
QOR is architected from the ground up to accelerate development and deployment of Content Management Systems, E-commerce Systems, and Business Applications. QOR is comprised of modules that abstract common features for such systems, such as a configurable and flexible back office, a content publishing system, a media library, and much more. We built QOR at The Plant to accelerate development for our clients, it is at the core of our engineering strategy, and we maintain it on an ongoing basis... -
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Crop plant growth potential forecasts
Unite map data with climate and agricultural data
This project aims to provide integrated information about the growth potential of crop plants with respect to climate change and geographical locations. As data storage is PostgreSQL in conjuction with PostGIS employed. -
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PLEKv2
PLEKv2: predicting lncRNAs and mRNAs
... Coding_Net_kmer6_orf_Arabidopsis.h5.bz2 USAGE Python PLEK2.py -i fasta_file -m model(ve: vertebrate , pl: plant) Examples: $ python PLEK2.py -i test.fasta -m ve Aimin Li, Haotian Zhou, Siqi Xiong, Junhuai Li, Saurav Mallik, Rong Fei, Yajun Liu, Hongfang Zhou, Xiaofan Wang, Xinhong Hei, Lei Wang. PLEKv2: predicting lncRNAs and mRNAs based on intrinsic sequence features and the coding-net model. BMC Genomics 2024, 25(1):756. https://doi.org/10.1186/s12864-024-10662-y -
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Kuwaiba Open Network Inventory and CMDB
Enterprise grade network inventory system and CMDB for telecom and IT
Kuwaiba is an enterprise grade network inventory system and CMDB for telecommunications and IT infrastructure. Some use cases can be seen here: * General Overview / Broadcast Radio & TV https://passionateaboutoss.com/oss-sandpit-resource-inventory-module/ * Modeling a 5G network in Kuwaiba https://passionateaboutoss.com/oss-sandpit-5g-network-inventory-prototype/ * Passive Optical Networks http://passionateaboutoss.com/oss-sandpit-gpon-network-inventory-prototype/ * IoT and Smart... -
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NeoLoad is a very comprehensive tool if you are looking for a performance test tool for web applications and other applicationsYour applications are all built differently, but they all need to perform. NeoLoad simplifies and scales performance testing for everything, from APIs and microservices, to end-to-end application testing through innovative protocol and browser-based capabilities.
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MicroRNAs (miRNAs) are of significance in tuning and buffering gene expression. Despite abundant analysis tools have been developed in the last two decades, plant miRNA identification from next-generation sequencing (NGS) data remains challenging. Here present a user-friendly pure Java-based software package, SRICATs, which enable researchers to perform all steps of plant miRNA analysis based on convolutional neural network methods. SRICATs outperforms currently popular software tools...
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Kitchen Garden Aid 2
Plan out your kitchen garden
An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. A fork of https://sourceforge.net/projects/kitchengarden. The windows installer contains all necessary files. A Linux and Mac package contains scripts and instructions to install the dependencies, and run KGA. If you download the jar... -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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Biosphere3D
Interactive landscape rendering based on a virtual globe.
Biosphere3D targets interactive landscape rendering based on a virtual globe. It supports DEM, satellite and aerial images, 3D models (Collada), 3D plant models, and Shapefiles. Biosphere3D was initially developed by the landscape visualization group of the Zuse Institute Berlin by Malte Clasen and is now developed further by Lenné3D GmbH. For more information about the used concepts have a look at the thesis of Malte Clasen: Towards Interactive Landscape Visualization Doctoral Thesis... -
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UIBM (= Universal Individual-Based Model) is an agent-based simulation/3d-dvisualization of the dynamics within multispecies plant communities of Northwest Europe, parameterized from databases using universal scaling laws.
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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PlantKeeper
A web-based application to manage houseplant collections.
For the Tech Exercise, I plan to develop a simple web application to catalogue and manage houseplant collections. This application will take in and store information about each plant, including but not limited to: Name, Location in house, Watering needs (weekly, biweekly, etc.), Light needs (bright, indirect, shade), Humidity needs (high, adaptable, dry), and Comments about the plant. This web application will allow users to track their houseplant collections with greater knowledge of each... -
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miRDP2
Accurately and fast analyzing microRNAs transcriptome in plants
miRDeep-P2 (miRDP2) is developed to accurately and fast analyze microRNAs (miRNAs) transcriptome in plants. It is adopted from miRDeep-P (miRDP) with new strategies and overhauled algorithm. We have tested miRDP2 to analyze miRNA transcriptomes in such plants with gradually increased genome size as Arabidopsis, rice, tomato, maize and wheat. Compared with miRDeep-P and several other computational tools, miRDP2 processed NGS data with superior speed. By incorporating newly updated plant miRNA... -
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IMMpractical implements various Markov chain model-based methods for analysis of DNA sequences. Please cite: Sparks, M.E., Brendel, V. and Dorman, K.S. (2007) Markov model variants for appraisal of coding potential in plant DNA. LNBI. 4463:394-405.
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GROWbox Supervisor System (GROWSS)
Automated Plant Environment Growing System using Raspberry Pi
GROWbox Supervisor System (GROWSS) is a grow box or grow cabinet environmental controller. GROWSS uses a Raspberry Pi (RPI) & Grove sensors to monitor and control the environment in your grow box or cabinet. Environmental factors such as temperature, humidity, soil moisture, & smoke (from fire) are monitored and displayed on a terminal connected to the RPI & on a mobile app. GROWSS also controls the exhaust fan and grow lights based on the time interval (ie. 12 hours on/12 hours off) &... -
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Jack LIRE (Linked Record)
Quantum universal object system with referencing and genetics
Jack LIRE (Linked Record) is a quantum database-backed life-long text record diary with referencing (linking) between records, and a data library for life-long keeping of files such as documents, photographs, music and more. The diary records are fully searchable. Files can be mentioned in diary records to preserve memories, document knowledge and ideas, and more. Massive numbers of diary records and files can be permanently kept. A database located on one computer can be accessed from... -
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BIOMOVE
Plants Distribution Modelling based on light competition.
“FATE-HD is a dynamic landscape vegetation model that simulates interactions between plant modelling entities (e.g. species or plant functional groups), their population dynamics and dispersal, whilst taking into account external drivers such as disturbance regimes, and environmental variations. The model is built on past conceptual and technical developments (Albert et al., 2008; Midgley et al., 2010) but has been entirely recoded in C++ and revisited.” Boulangeat, I. , Georges, D... -
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Plant app
A ruby-activeRecord-MySQL application which stores data about plants
A ruby-activeRecord-MySQL application which stores data about plants using the Sinatra ruby framework. Code should work on 2.0.0 ruby version though modern versions should be supported too. (Up to 2.4.6) Also, database supposed to have Hungarian information hence application supports UTF-8. The dummy plant is also written in Hungarian text. -
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Phenalysis
Analyze agronomic plant research plots in aerial orthomosaic images.
A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub...