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    pycoQC

    pycoQC

    pycoQC computes metrics and generates Interactive QC plots

    PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data. PycoQC relies on the sequencing_summary.txt file generated by Albacore and Guppy, but if needed it can also generate a summary file from basecalled fast5 files. The package supports 1D and 1D2 runs generated with Minion, Gridion and Promethion devices and basecalled with Albacore 1.2.1+ or Guppy 2.1.3+. PycoQC is written in pure Python3. Python 2 is not supported.
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    A Python programming environment providing memory sizing, profiling and analysis, and a specification language that can formally specify aspects of Python programs and generate tests and documentation from a common source.
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