Search Results for "dicom mri 3d"
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Showing 53 open source projects for "dicom mri 3d"
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1
ITKSnap
View 3D Images (also work with DICOM MRI images)
This software is used to view the 3D DICOM images. It is highly used to view 3D Medical Images (Human Brain, etc.). The official website for this software is: http://www.itksnap.org/ -
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x-unet
Implementation of a U-net complete with efficient attention
Implementation of a U-net complete with efficient attention as well as the latest research findings. For 3d (video or CT / MRI scans). -
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TorchIO
Medical imaging toolkit for deep learning
...TorchIO is a Python package containing a set of tools to efficiently read, preprocess, sample, augment, and write 3D medical images in deep learning applications written in PyTorch, including intensity and spatial transforms for data augmentation and preprocessing. Transforms include typical computer vision operations such as random affine transformations and also domain-specific ones such as simulation of intensity artifacts due to MRI magnetic field inhomogeneity. -
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VoxelMorph
Unsupervised Learning for Image Registration
VoxelMorph is an open-source deep learning framework designed for medical image registration, a process that aligns multiple medical scans into a common spatial coordinate system. Traditional image registration techniques typically rely on optimization procedures that must be executed separately for each pair of images, which can be computationally expensive and slow. VoxelMorph approaches the problem using neural networks that learn to predict deformation fields that transform one image so... -
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5
DcmStoreService
A lightweight and robust Dicom server to archive medical images
Dicom storage service - DcmStoreService is a lightweight and robust package for implementing the Dicom Storage SCP Service. The application (C++ compiled x86/x64) runs on computer as automatic MS Windows system service (24 hrs). It has a variety of customizable options. -
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Iso2Mesh - A 3D Mesh Generation Toolbox
A 3D surface and volumetric mesh generator for MATLAB/Octave
A simple yet powerful mesh generator based on MATLAB/GNU Octave language, creating finite-element mesh from surfaces or arbitrary 3D volumetric images (such as MRI/CT scans) with fully automatic workflows. -
7
iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). Brain parcellations (atlas) and surfaces can be imported to aid 2D and 3D visualization and anatomical localization can be done in native or normalized space. ... -
8
SimPET
A web platform for the MC simulation of realistic brain PET data
SimPET (http://www.sim-pet.org) is an open, efficient, and user‐friendly online platform for the generation of synthetic brain PET datasets. The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET... -
9
AlizaMS
DICOM Viewer
DICOM Viewer Development and releases: https://github.com/AlizaMedicalImaging/AlizaMS Other versions: https://www.aliza-dicom-viewer.com - CentOS 8, Red Hat Enterprise Linux 8, Fedora 28 or newer - s. Github releases or - Flathub ¹ https://flathub.org/apps/details/com.github.AlizaMedicalImaging.AlizaMS - Fedora ¹ sudo dnf install alizams [1] Incl. arm64 architecture -
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10
MELAGE is a neuroimaging software developed for visualizing and processing medical images, both Ultrasound and Magnetic Resonance Images (MRIs). Specially it has been prepared for neuroimaging of newborns, it is a versatile platform that allows the visualization of many types of medical images. It allows to load two, three and four-dimensional images of both techniques and in the case of 3D images it allows the simultaneous visualization of the three orthogonal planes which facilitates the...
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11
fastMRI
A large open dataset + tools to speed up MRI scans using ML
fastMRI is a large-scale collaborative research project by Facebook AI Research (FAIR) and NYU Langone Health that explores how deep learning can accelerate magnetic resonance imaging (MRI) acquisition without compromising image quality. By enabling reconstruction of high-fidelity MR images from significantly fewer measurements, fastMRI aims to make MRI scanning faster, cheaper, and more accessible in clinical settings. The repository provides an open-source PyTorch framework with data... -
12
beben - DICOM to STL
builds a 3D model based on a contours from a DICOM RTStructures file
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13
VR Neuroanatomy
Explore and dissect a complete brain model in VR
Understanding the anatomy of complex organs such as the human brain can be a challenge for students, so there is a definite advantage given to students who can experience the structures in a spatial way through real or virtual experiences. Since 2016, the Marquette Visualization Lab has been utilizing a dataset of 3 and 7 Tesla MRI scans from the Structural Informatics Group at University of Washington to visualize the structures of the brain in their Cave, utilizing the Unity game engine and 10 stereoscopic 3D projectors. Most MRI scans are presented as a volumetric rendering, but this dataset is unique because it was fully labelled and parcellated, allowing lab users to not only view the structures of the brain, but also virtually dissect it in a large scale, collaborative virtual reality environment. ... -
14
CorThiZon
Cortical Thickness of brain by Zones
CorThiZon is a Matlab toolbox. MRI 3D T1 images are treated to estimate cortical thickness by zones in native and normalized space. It uses a Laplace-based technique following brain segmentation. Results can be easily reported in Excel files for further statistical analysis. If you use this toolbox, please reference: ‘Early diagnostic of Alzheimer’s disease using cortical thickness: impact of cognitive reserve', Querbes O, Aubry F, Pariente J, Lotterie JA, Démonet JF, Duret V, Puel M, Berry I, Fort JC, Celsis P, Alzheimer’s Disease Neuroimaging Initiative, Brain, 2009 Aug, 132(Pt 8):2036-47 A footnote giving the link to: http://sourceforge.net/projects/corthizon/ will be appreciated. -
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SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
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In this Project, a human head voxel model is developed for use in CST Studio commercial software pack using an improved voxel set extracted from MRI images of a human head. The proposed voxel model contains 256x256x128 voxel elements with dimensions of 1.1x1.1x1.4 mm. Moreover, the dispersive dielectric properties of head tissues, as well as their density and thermal conductivity, are embedded. This head voxel model was presented at the ICEE2017 conference. If you find this tool useful,...
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17
RBF Python Scripts
Collection of python scripts, mostly DICOM or MRI related
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18
PyVE
PyVE is image analysis and visualization environment
PyVE is image analysis and Visualization Environment focused at clinical use. At the core of it there is a powerful viewer for displaying 3D datasets (MRI, PET, CT) based on VTK. It all comes precompiled allowing painless access to Python (2.x), the ITK toolkit for image analysis, numpy/scipy for numerical calculations, Qt and PyQt4 for the development Graphical User Interfaces. It is what you need for fast prototyping and development of more complex projects. -
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3DimViewer
3DimViewer is a lightweight 3D viewer of medical DICOM datasets.
3DimViewer is a lightweight 3D viewer of medical DICOM datasets that is distributed as open source software. The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist? -
20
BuilderM2O
Freeware to pre-process musculoskeletal subject-specific models
Builder Mark II – Organ (BuilderM2O) is a pre-processor for musculoskeletal subject-specific models. This freeware allow you to import imaging, gait analysis, EMG, segmentation, and finite element data, and fuse them toward the creation of organ scale subject-specific models of bones, joints, muscles, ligaments, and cartilages. Last incarnation of 12 years legacy software project named Multimod Application Framework, now discontinued, BuilderM2O provides to the many biomechanics... -
21
MRiLab
A Numerical MRI Simulation Platform
The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time... -
22
Stereo-display-dti
Effects of display factors on diffusion tensor MRI visualizations
This project was launched to further study other factors beyond those during the data processing - display factors such as screen size and stereo/mono characteristics. With this study, we expected to verify the hypothesis that, given the dense information in DTI streamtube visualization, enlarging screen and/or employing stereo would enhance the visualization of DTI dataset as a whole by improving user's task performance. -
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Gryphon-dti
A Little DSL for Diffusion MRI Visualizations
Based on our many discussions with domain users, we have recognized that domain scientists want a visualization of their own data to be designed and built by themselves. In the broad data visualization scenarios, that Excel and Flash are still the most popular visualization tools even today after long existence is probably attributed to their capabilities of empowering users to design their own visualizations. So in a narrower scope, what if domain scientists with DTI visualizations have a... -
24
InBox
Multiple-view Multiple-selection interface for exploring DTI visualiza
Diffusion tensor magnetic resonance imaging (DTI) is the currently unique in-vivo MRI technique for probing the distribution of neural pathways and micro-structures of biological tissues, thus promising for neurology and neuroanatomy research. However, the 3-Dimensional DTI tractography (DTT) suffers from the overwhelmingly dense resulting fiber tracts in its visualizations which substantially impedes effective exploration, tracts-of-interest (TOI) selection, for example, in the practical... -
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MRI QA Toolbox
Software for analysis of MRI QA images
This is a redesign of the former project "ACR Toolbox", now designed in a more general way for analysis of all type of MRI quality assurance (QA) images. Contact the project admin directly for support.
