Search Results for "cytometry"

FCSalyzer is a free program for analysing flow cytometry data. It is programmed in Java and should therefore work on many different operating systems. FCSalyzer offers an easy What-you-see-is-what-you get interface and provides the standard analysing tools - dot plots, histograms, complex gating strategies and associated statistics. Impressum / Legal Notice Sven Mostböck Wien Austria e-mail: sven_mostboeck@users.sourceforge.net second contact option: use the open discussion on the FCSalyzer sourceforge page: http://sourceforge.net/p/fcsalyzer/discussion/

We are developing data standards and software tools that implement these standards to develop a systemic approach to modeling, capturing, analyzing and disseminating flow cytometry data.

...Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. MetaSort provides a sorted mini-metagenome approach based on flow cytometry and single-cell sequencing methodologies, and employs new computational algorithms to efficiently recover high-quality genomes from the sorted mini-metagenome by the complementary of the original metagenome. Through extensive evaluations on simulated dataset, salivary and gut microbiomes, we demonstrated that metaSort has an excellent and unbiased performance on genome recovery and assembly.

...A special treat is the possibility to transform categorical data into numerical data. The resulting FCS data file can be analysed in regular flow cytometry softwares, such as the open source FCSaylzer. For more info, take a look at the Wiki. Data2FCS needs Java 1.7 or higher to run.

This is the reference library for ICS (Image Cytometry Standard), an open standard for writing images of any dimensionality and data type to file, together with associated information regarding the recording equipment or recorded subject.

Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.

A set of Matlab scripts defining two tools. The first tool ('Ploidy_analysis_5.m') loads FCS2.0 format flow cytometry datasets and perform cell cycle model fittings to the raw data, interactively producing one or more ploidy estimates per experimental dataset. The second tool ('Analyze_Aneuploidy.m') can be used to make estimates of likelihood of a certain number of extra chromosomes being responsible for an observed non-euploid ploidy estimate.

GenoSIGHT is an adaptive imaging cytometry software environment.

Here you can find source code and documentation of FLOCK - Flow Cytometry Clustering without K. The code will be updated here only after its deployment at ImmPort.org. For the latest version of FLOCK, please contact mqian@jcvi.org

Flow Investigation using N-Dimensions (FIND) is a program designed for analysis and visualization of Flow Cytometry data. FIND focuses specifically on automated population discovery (clustering) methods. The project targets both users and developers.

JFlux is a java library and graphical user interface to work with flow cytometry data. In particular, it is adapted to the COPAS biosorter and can analyze expression profiles.

This project is a diagnostic platform that enables the end user to quickly and accurately detect TB from a stained sample. The goal in open sourcing this project is that it will be used as a platform for other types of detection.

The project includes the first implementation of the ACS (Analytical Cyomtetry Standard) for Flow Cytometry. The program allows you to analyze various flow cytometry ACS 1.0 files with types of byte, int32, and parShort.

The Flow Cytometry Laboratory Information Management System (FlowLIMS) is a web-based software system that gives users the ability to create and manage experiment protocols for the DiVa and FACScan flow cytometers

FreeFlow is web-based system, written in php, designed to facilitate high-throughput analysis of flow cytometry data for drug discovery. It processes and maintains flow cytometry data and is coupled with data analysis and visualization tools.