Search Results for "research database" - Page 9
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Showing 2136 open source projects for "research database"
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miRDiana
MATLAB package to find the miRNAs targeting a list of genes
To select miRNA target genes we developed software in MATLAB® (MathWorks®) called miRDiana that collects the union of mouse validated targets from the TargetScan, MicroCosm, mirTarBase and miRWalk 2.0 databases. Firstly, the software downloads each database and preprocesses by standardizing the miRNA and gene names. It strips the miRNA names from the species ids and converts the gene names to the official symbols of the National Center for Biotechnology Information (NCBI) database. Next, for... -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software... -
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Korean Analyzer Rhino
Parsing Korean words by morpheme and part-of-speech
RHINO parses Korean words by morpheme and part-of-speech. Its dictionaries are based on Korean Modern Tagged Corpus(12 million phrases scale) which was made by Korean government. So it analyses many cases of stems and endings. And the newly developed Dynamic Dictionary Technology can make words to react with their context. That is, a programmed database. For more information see the files in the help folder. -
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Leseratte is a Java parser for German written language. Currently, it contains a German lexicon (based on the Wiktionary), inflexion rules, a grammar and a parser. (Semantics component planned.) Usable as a Java library, also provides a graphical UI.
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Goal of this projects is to design unified general binary data format and to provide open-source libraries and tools for it.
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Unified Sessions Manager
Pioneering Private and Public Cloud Management since 2008
The UnifiedSessionsManager supports the integrated management of user sessions within Private-Clouds, comprising heterogeneous IT landscapes of various physical and virtual machines, hypervisor management, and virtual user sessions with remote desktops. Extracted documents see https://sourceforge.net/projects/ctys-doc. -
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BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests. Models presented are annotated and linked to relevant data resources and are available in various format
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This project is intended to provide code to be used with MySQL and Python to create a database of major league baseball game events which are freely provided by the mlb.com Gameday application. Older version also support creating a retrosheet.org database but that is no longer supported. All major and minor league pitch location and game statistic data can be downloaded using BBOS. Installation Videos! Part 1: http://youtu.be/rnv2VLcG-eI Part 2: http://youtu.be/eFudbMWHNlQ Special...
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UbForms
Field data measurements entry and complex data structures at ease
With UbForms a person can manage field data measurements entry and complex data structures at ease. This app is inspired and based on the UrForms data model and design with several intricate enhancements and fixes. It is open source and free with a low privacy footprint. -
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intelligent thinking system solving
An approach where computer solves problems like a human brain does;
The intelligent, thinking systems solving project uses a method whereby the computer solves the problem in a way a biological way does. The result of this is that it can learn and emulate a behavior or strategy. Two examples of the process use the game of chess and the game of go. -
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Autshumato MTWS
Autshumato Machine Translation Web Service
Web service providing access to the Autshumato Machine Translation (MT) and other Moses Statistical MT systems. Functionality includes: - Automatic sentence, document, web page translation. - Improvements for translations. - Reviewer requests and interface to review improvements - Connection to the latest version of the Autshumato ITE, Post Edits done on inserted automatic translations are automatically submitted to the MTWS. - Administration interface to add users, reviewers and MT... -
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Retro
Retro Games in Gym
RETRO (Retrieval-Enhanced Transformer) is a large language model architecture developed by OpenAI that augments transformer models with a retrieval mechanism. Instead of relying solely on learned parameters, RETRO retrieves relevant documents from a large external database during inference, allowing it to ground responses in external knowledge. This design improves factual accuracy, reduces hallucinations, and enables smaller models to perform comparably to much larger ones by leveraging... -
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TCellXTalk
TCellXTalk Web-App from LP CSIC/UAB
TCellXTalk is a comprehensive database of experimentally detected phosphorylation, ubiquitination and acetylation sites in human T cells. The web-app at www.TCellXTalk.org makes TCellXTalk accessible from Internet, and enables the in silico prediction of potential co-modified peptides to facilitate their experimental detection, using targeted or directed mass spectrometry, for the study of protein post-translational modification cross-talk. More detailed information on TCellXTalk and... -
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LymPHOS2
LymPHOS2 Web-App
LymPHOS2 is a web-based Application at www.LymPHOS.org containing peptidic and protein sequences and spectrometric information on the PhosphoProteome of human T-Lymphocytes. - Nguyen, TD., Vidal-Cortes, O., Gallardo, Ó., Abian, J., Carrascal, M., LymPHOS 2.0: an update of a phosphosite database of primary human T cells. Database 2015, 2015. DOI: 10.1093/database/bav115 - Carrascal, M., Ovelleiro, D., Casas, V., Gay, M., Abian, J., Phosphorylation analysis of primary human T lymphocytes... -
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NumericalChameleon
a free cross platform precise unit converter, supports 6000+ units
The NumericalChameleon is a free, open source, cross platform software in order to convert units. It converts numbers with a precision of up to 1000 significant figures. It supports more than 6000 units in 94 categories. It has been localized in 10 languages. -
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epidaurus
tumor epigenetic database
Epidaurus is a collection of epigenetic datasets including transcription factor ChIP-seq, histone ChIP-seq, DNase-seq, FAIRE-seq, DNA methylation, etc. It also includes commonly used genome features (GC content, conservation) and RNA-seq. A user friendly interface has been developed to interrogate and visuzlize these datasets. -
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labman2
A web database for experimental results of research
A database with a web interface for storing the experimental results of research, aimed at ease of adding new types of data. Goal is to make adding as simple as one day for an unexperienced in programming scientist to add a new type of data similar to an existing type, by preparing two - three files analogues to the existing ones. An experienced programmer should need only one day to one week for adding a totally new kind of data like arrays with more dimensions that was available before. -
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DuroDBMS
Relational Database Management System
A relational database management system, based on the principles laid down in the book "Databases, Types, and The Relational Model: The Third Manifesto" by C. J. Date and Hugh Darwen. -
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FRDCSA
Formalized Research Database: Cluster, Study and Apply
We are creating a large repository of FLOSS AI software that solves problems which affect people through the Free Life Planner and FRDCSA projects. We are making OS packages for external and internal software that employ symbolic AI (Prolog/OpenCYC/etc) and connectionist AI (ML/DL/NN), to solve computational problems. Our goal is to use logic to solve planning problems - to treat the world as a "game" and then win that game by proving that bad things don't happen to people.... -
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Whitebeam Web Application Server
JavaScript/XML engine for Apache
Whitebeam is a complete rapid development Web application server integrating Apache, Posgresql, Mozilla's SpiderMonkey JavaScript engine with it's own powerful XML/XPath based secure application framework. -
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Blazegraph (powered by bigdata)
Fast, scalable, robust graph database platform
Blazegraph has moved to Github. Please see https://github.com/blazegraph/database/. -
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playSMS
Free and Open Source SMS Gateway Software. Not A Free SMS Service.
playSMS is a free and open source SMS management software, a web interface for SMS gateways and bulk SMS services. -
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MyCoRe
your repository framework
MyCoRe is an Open Source project for the development of Repositories, Digital Library and archive solutions. The technical base of the system is formed of Java class libraries, XML technology and different database backends. Since 2015 we use https://mycore.atlassian.net/ for bug tracking. Please use our ticket system there. -
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DICOM Confidential
An open source Java DICOM de-identification toolkit
DICOM Confidential project develops an open source DICOM (Digital Imaging and Communications in Medicine) de-identification toolkit that provides the necessary flexibility to account for different de-identification requirements.
