Search Results for "research database"
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Showing 73 open source projects for "research database"
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refbase - Web Reference Database
Online bibliographic manager for research groups. Zotero-compatible.
refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS. -
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Virtuoso is a scalable cross-platform server that combines Relational, Graph, and Document Data Management with Web Application Server and Web Services Platform functionality.
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CpDB
Relational database schema and tools for bacterial genome annotation
This software allows us to create a relational database in PostgreSQL hosting full bacterial genomes. Besides the database, there is software, like a parser, to convert EMBL or GBK files to the CpDB relational schema. Once in the CpDB, one can extract unlimited reports from bacterial genomes using SQL. This software is part of the Ph.D. in Bioinformatics from Anderson Santos (https://orcid.org/0000-0003-3418-0823) developed under the Corynebacterium pseudotuberculosis (Cp) pangenome project.... -
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Bibliophile is a loose grouping of independent OS or GPL bibliographic systems and aims at promoting discussion, standards and the development of common utilities.
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Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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This project aims at creating an open source chemistry plugin / cartridge for the relational database system Oracle. Free Oracle chemistry cartridge.
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xplordb
Open mineral exploration database system
Now also living on gitlab. https://gitlab.com/mds-/xplordb Mineral Exploration Database template/ system for Postgres/PostGIS and QGIS. The project incorporates import scripts, data storage, validation, reporting, 3D drill trace generation and more. psql, pgAdmin and QGIS are the suggested database and GIS front-end programs. -
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Autshumato MTWS
Autshumato Machine Translation Web Service
Web service providing access to the Autshumato Machine Translation (MT) and other Moses Statistical MT systems. Functionality includes: - Automatic sentence, document, web page translation. - Improvements for translations. - Reviewer requests and interface to review improvements - Connection to the latest version of the Autshumato ITE, Post Edits done on inserted automatic translations are automatically submitted to the MTWS. - Administration interface to add users, reviewers and MT... -
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Silicolife delivers applications such as an Excel to database loader, tools, and utilities such as effective exception handling. New techniques and technologies can be tried out in a real world context by developers and advanced end users.
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Here, we presented a generic database code (MySQL), based on the abstraction of the apiary system, for storing chronological data. If you are a developer, you can use, re-design, and improve the code, adding the improvements and comments in the support section. To cite this: Fernando Pérez-Rodríguez, Cátia J Neves, Dora Henriques & M Alice Pinto (2018): A note to transfer a generic database pseudocode for storing chronological data from research in apiaries, Journal of Apicultural Research, DOI: 10.1080/00218839.2018.1517988
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"Circular Multilateral Barter" (CMB) is aimed at supplying entrepreneurs with a way to exchange goods and services within a p2p-network, without using money, overcoming the "double coincidence of wants" problem, inherent to traditional barter. Most importantly, CMB allows traders to issue their own currencies (called "products"), which others can redeem, trade, or make payments with. One thing that distinguishes CMB from other "credit commons" is that all debts in CMB are user-to-user...
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AlienVault OSSIM
Open Source SIEM
OSSIM, AlienVault’s Open Source Security Information and Event Management (SIEM) product, provides event collection, normalization and correlation. For more advanced functionality, AlienVault Unified Security Management (USM) builds on OSSIM with these additional capabilities: * Log management * Advanced threat detection with a continuously updated library of pre-built correlation rules * Actionable threat intelligence updates from AlienVault Labs Security Research Team * Rich... -
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Makumba
Moved to GitHub: https://github.com/makumba
Makumba helps you rapidly develop data driven web applications. Provides a custom JSP taglib as a main interface, but leaves API open for advanced access. It is implemented in Java. Moved to GitHub: https://github.com/makumba -
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OSGC - OpenSource Geospatial Catalogue
OpenSearch GeoSpatial Catalogue
OSGC is an Open Source implementation of an OpenSearch GeoSpatial Catalogue compliant to OGC 10-32r3 specification, developed by EGI.eu (http://www.egi.eu/) under the ENVRI (http://envri.eu/) project. OSGC provides a catalogue engine built on top of a PostgreSQL+Postgis database, which exposes a cusmizable OpenSearch interface. Most of the application configuration can be set from the Admin web interface, while Data Administrators have a separated Dropbox interface, which ease the... -
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inventory management system
A simple inventory system for Library, Lab & any rent shop.
This is the inventory management system of the research lab of INDEPENDENT UNIVERSITY, BANGLADESH. It also can be use for any Library or any kind of inventory system from where people can borrow products/parts/books/cd/dvd etc. I use MYSQL database and C# in this project. I also provide the source code of it. This is my first contribute to open source. So let me know your opinions. -
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eubirdb is a bird(watchers) DB for name translation (scientific,it,en,fr,de,sp,nl) and retrieval, wants to be a base for birdwatchers (and ornithologists) software&data (checklist,img,...). Currently for EU(ring) aims to worldwideness. See forums for mor
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PhpLabware is a web-based groupware application suite tailored to research laboratories. Initial services include databases for reagents (strains, antibodies, plasmids, proteins), pdf files (a 'reprint' repository), and protocols.
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Jaspa
Spatial extension for relational database system. Follows OGC standars
Jaspa is a spatial extension for relational database systems, implements the OpenGIS Simple Features for SQL and partially the SQL/MM standard. Currently supports PostgreSQL and H2 as the RDBMS backends. Jaspa brings around 200 spatial functions to relational database systems that support a full set of java store procedures. The first version of Jaspa was released in July 2010. Jaspa has a similar functionality as PostGIS 1.5, supporting spatial operators and predicates, arrays of... -
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Databases to aid Metabolomics projects providing storage functionality for raw and preprocessed data, and integration with existing data analysis environments.
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SAADA transforms a set of heterogeneous astronomical data FITS files in a powerfull database deployed on the Web and including VO features. The database is located on your host and keeps under your full control. This job doesn't require to write cod
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Biomedical Information Management System (BIMS) is a modular multilayer object - oriented software architecture, which provides a flexible computational solution to capture and manage a heterogeneous biomedical data: textual and visual information.
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The Princeton Protein Orthology Database (P-POD), developed by the Genome Databases Group at Princeton, computes and displays families of orthologs between multiple organisms.
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The Karoo Project is a framework for making it practical to create distributed applications. By "practical", I mean that it must do it uncomplicatedly, efficiently, and cheaply. This project provides application management, queuing, and IPC.
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An online database project with database and web interface to archive, manage, search and download individual-based life history data that have been collected from wild primate populations.
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Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
