Search Results for "r package xmsannotator" - Page 8
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Showing 261 open source projects for "r package xmsannotator"
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phcfM
R package for modelling anthropogenic deforestation
phcfM is an R package for modelling anthropogenic deforestation. It was named after the REDD+ pilot-project 'programme holistique de conservation des forêts à Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change data... -
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RIPE (Regulatory network Inference from joint Perturbation and Expression data) is a novel three-step method that integrates both perturbation data and steady state gene expression data in order to estimate a regulatory network. The ripe package is written in R, with additional functionality provided by a MATLAB executable file. The executable file uses a runtime engine called the MATLAB Compiler Runtime (MCR). The executable for different architectures is distributed on this site together...
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WATSpackage
R package for acoustic-assisted whale survey simulation
WATS is an R package (>R2.15) whose main purpose is to run an individual-based simulation of an acoustically-assisted mark-recapture survey of whales Version 1.0 = for R2.15.x Version 1.01 = for R3.0.3+ For details see: Peel D, Miller BS, Kelly N, Dawson S, Slooten E and Double MC (2014) A simulation study of acoustic-assisted tracking of whales for mark-recapture surveys. PloSOne in press. -
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SimAssem
For processing and/or simulating species assemblage data.
SimAssem is a tool for investigating the performances of species richness estimators across widely ranging assemblages and survey designs. Assemblages are simulated by specifying the: 1) number of species, 2) total abundance of individuals, 3) abundance distribution, 4) spatial configuration, 5) species detection probabilities, 6) survey design, and 7) number of grid cells to survey (out of a square grid comprised of 10,000 cells). SimAssem also processes existing encounter data and formats... -
Using just a single server or virtual machine, Statseeker can be up and running within minutes, and discovering your entire network in less than an hour, without any significant effect on your bandwidth availability.
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A light-weight Python package for facilitating the user to use R in Python through PIPE. PypeR can be used with Python 2.3 or later, Python 3.X, Jython, or IronPython. Please refer to http://www.webarray.org/softwares/PypeR/ for bug fixes
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SlinkS
A software package for disulfide-bridged peptide identification in R
A software package for disulfide-bridged peptide identification created in R -
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sjPlot
sjPlot - data visualization for statistics in social science
An R-package for data visualization for statistics in social science. -
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tigreBrowser is a web-based browser for ranking results from R/Bioconductor package tigre and similar tools. It allows easy viewing, sorting and filtering of visualisations of models produced by tigre.
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EnvStats
An R Package for Environmental Statistics
EnvStats is an R package for environmental statistics. It is the open-source successor to the commercial module for S-Plus© called "EnvironmentalStats for S-Plus", which was first released in April, 1997. The EnvStats package, along with the R software environment, provides comprehensive and powerful software for environmental data analysis. EnvStats brings the major environmental statistical methods found in the literature and regulatory guidance documents into one statistical package, along... -
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GISBox by Citiviz
Ready-to-use appliance for GIS, Data Mining and Analysis, Modelling...
GISBox by Citiviz is a ready-to-use virtual appliance containing an assortment of powerful, free and open source GIS, Data Mining and Analysis, Modelling and Programming software and packages. The pre-configured and tested GISBox allows you to try and use in few minutes a variety of software used by data scientists, engineers, physicists, mathematicians, geomatics engineers, and geographers from around the globe, without installing anything more than once the Oracle VirtualBox™ software... -
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CORNA is a package for R that analyses microarray data and miRNA target prediction data to find statistically over-represented miRNA-target relationships.
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VariabilityAnalysisInNetworks
An R package for identifying biologically perturbed networks
The VAN package enables an integrative analysis of (i) gene expression data with protein-protein interaction networks or (ii) gene and microRNA expression data with microRNA-gene interaction networks to identify biologically perturbed networks. -
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rTRM
Identification of transcriptional regulatory modules (TRMs)
This R package can be used to identify TRMs using experimental evidence from a single ChIP-seq experiment. It combines computational predicted transcription factor (TF) binding sites, gene expression and protein-protein interaction (PPI) data and use it to predict TRMs. -
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Wave Audio Package
Wave Audio Package originally developed by Kambiz R. Khojasteh
The Wave Audio Package provides seven components for playing and recording of wave audio formats, two components for storing wave data as Delphi resources, one audio mixer component, and one high resolution multimedia timer. The package has also a set of useful functions for manipulating wave audio's. -
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OptInterim
Optimal two and three stage clinical trial designs
R Package for Optimal Two and Three Stage Designs for Single-Arm and Two-Arm Randomized Controlled Trials with a Long-Term Binary Endpoint -
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Weibull-based reliability toolkit for R
R package for Weibull analysis on (life-)time observations.
This is a small R package for doing Weibull-based reliability analysis. This R package is now obsolete and has been superseded by 'project Abernethy' on http://r-forge.r-project.org/projects/abernethy/. -
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basic-statistical-utilities-for-r
Various statistical utility functions for R.
Various utility functions that package common formulas for confidence intervals, tests of means, the Marascuilo test, sample size estimation, and other basic tasks. -
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RCFPD
Random Collection of Functions for Proteomics Data Analysis
An R package for distribution of data analysis functionality used by the Proteomics Core at Weill Cornell Medical College in Qatar. -
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JMulti-UEK
an implementation of JStatCom Framework
Another implementation of JStatCom Framework using R package -
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nupoint
nupoint: An R package
nupoint: An R package for density estimation from point transects in the presence of non-uniform animal density -
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insol
Computes paleoclimate insolation
R package to compute Incoming Solar Radiation (insolation) for paleoclimate studies. Features three solutions: BER78, BER90 and LA04. Computes daily-mean, season-averaged and annual means for all latitudes. -
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Kiel University Relation package
Fast C library for relation algebra using binary decision diagrams.
Kure is a C library which provides manipulation of relations and operations of relation algebra using a fast implementation using binary decision diagram. It provides a Lua based domain-specific embedded programming language to conveniently manipulate and work with relations. For instance, given relations R, S, the tupling of them can be computed using [R,S] and they can be composed using R*S. -
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ElecLaw
A simple (but growing) calculator for many electronic laws
This is a compilation of applications that have been made into one package, all of the programs included have been created by me, i have included a few simple law calculators at the moment, but will add more throughout updates. The current build includes: • Leyden Jar Capacitance Calculator • Resistor Colo(u)r Coder And more! -
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SPA - SNP based pathway analysis
SNP based pathway analysis
Name: SPA Full name: SNP based pathway analysis Maintainer: jiangyongshuai@gmail.com liuguiyou1981@163.com Language: R package Description: SPA is an R package which can identify disease or phenotype related pathways. Input rs# and GWAS test p-values, you can get the related pathways.