Search Results for "perl script" - Page 8
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Showing 913 open source projects for "perl script"
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1
Link Finder
Perl script to extract links from any html page
Perl script (with source code) to extract links from any html page. No requirements or dependencies for this perl script. -
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BioParallelCorporaExtractor
BioPCE: a tool to extract parallel corpora of biomedical texts
BioParallelCorporaExtractor (BioPCE) is Python tool to extract parallel corpora of biomedical texts. It's a joint work between Elise Prieur-Gaston, Antonio Jimeno Yepes and Aurélie Névéol. In the "Files" tab in this page, you can find the perl script used to web-crawl publisher data and a sample input file created for 5 MEDLINE citations. Each line in the input file should contain the PubMed identifier (PMID) and its Digital Object Idetifier (DOI) separated by the pipe symbol. For each line, the crawled html document is stored in a file with name PMID.html -
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FTP Synch
FTP Synchronization Script for Perl
FTP Synchronization Script for Perl to synchronize the contents of your hard disk and FTP folder together. Built on perl and requires the module Net::FTP to run. -
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Subcheck is a Perl script which checks srt subtitle files for errors. Such as overlapping, negative duration, to short displaytime, rewrite subtitle lines with another character length (useful for hardware divxplayers), etc. It is highly configurable.
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5
greps
grep a subset of files
greps is a script written in perl which wraps the regular installed grep with new options that can make the search faster and return more relevant results (or less non-relevant results). The usage of greps is same as you would use grep, and all options that are available with grep can be used in the same way also with greps. Basically what greps does is allowing you to choose also the patterns or extentions of relevant files. -
6
LibDelivery
Delivers important libraries for software projects for multiple OSes.
Downloads and compiles the source code of a specified library and makes it accessable through a master perl script. This is useful for applications with many dependencies and multiple systems to run on. -
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Apache Log Reader
Script to report downloads recorded in Apache log files
This script, written in Perl, takes the WWW name of a file and reports downloads recorded in the main Apache log file. -
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HTML Table Generator
This Perl script generates a simple HTML table from a text file.
This Perl script generates a simple HTML table from a text file. The file begins with zero or more lines with set options of the form option = value. The first line after the options contains just spaces and | which defines the extent of each column. -
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Web Page Parser
This is a simple web page parser based on Perl
The purpose of this script is to "beautify" raw html code that might not be properly formatted into a properly parsed and easy to read html page. It attempts to auto-correct unclosed tags that may render correctly in a browser but is incorrectly formatted. This script is setup to take a single url as input but can easily be modified to handle multiple urls or local input. -
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10
Email Address Client Search
Email Address Client Search
A simple perl script that's designed to do email lookups on a POST server and order the results by first name, last name and email address. -
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Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide. It can be easily adapted for other genomes.
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12
git-cal
github like contributions calendar on terminal
git-cal generates a terminal-friendly contribution calendar for your Git activity, echoing the familiar heatmap seen on hosting sites but rendered in plain text. It scans your repositories’ commit history and aggregates changes per day, then prints a compact grid that highlights streaks and quieter periods. The output works in standard shells, making it handy for dashboards, status emails, or a lightweight snapshot of productivity without opening a browser. Options typically let you choose... -
13
Proxyp
Multithreaded Proxy Enumeration Utility
Proxyp is a small multithreaded Perl script written to enumerate latency, port numbers, server names, & geolocations of proxy IP addresses. This script started as a way to speed up use of proxychains, which is why I've added an append option for resulting live IP addresses to be placed at the end of a file if need be. Requires IP::Country module and root/administrator privileges. -
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MySQL Local and/or Remote Backup
The name says it all.
A Perl script to manage MySQL Backups, both locally and remotely (FTP). For a simpler Bash script (which doesn't manage FTP), see the AutoMySQLBackup project by wipe_out. I made this because it was easier for me to create a whole new Perl script than to improve upon his bash goodness. Right now you can expect it to save databases (via mysqldump or mysql with a custom query) and upload them using FTP (via a Perl module). -
15
Open heart internet API solution
Heart internet API script set
Perl heart internet API integration. This project is a PERL implementation of web hosting and customer management using the heart internet API. Using the API it will automate package creation, deletion domain registration and billing. Currently its work in progress but the aim is to be a full replacement for HostPay for users who need finer control over the scripts/templates and functionality. -
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'watchbasedir' is a simple perl script front-end for 'genbasedir' utility which automagically updates 'base' after package files changes.
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Pitah
Pitah - a collection of administrative scripts.
Pitah is the (Egyptian, think Ptah) name of a collection of administrative scripts designed to make your life easier. Or not, depending on how you (want) to use it. I therefore cannot give any warranty, but you can use them under the GPL, if that is not nice ;) -
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BlastConverter
Converter for NCBI-like BLAST output into XML one.
Different applications (for example Blast2GO) uses BLAST results as a starting point to their analysis. From the other hand, fast BLAST machine allows user to get result very fast. The only problem that can user faced on, that there is no convertor between different BLAST format outputs. Blast2Go requires XML-formatted data while decypher does not producing it. This script is a converter for NCBI-like BLAST output into XML one. -
19
collapsetypes
removes identical sequences
Perl script for removing identical or near identical DNA sequences from a fasta file. creates a file with only unique haplotypes / genotypes -
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H-two-O
h-two-o is a Converter For Convert Python Script to EXE File
H-two-O is a Compiler For VBScript Javascript LUA PYTHON PERL PHP RUBY This Compiler written by Hadi Kiamarsi . -
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VAP yra CGI skriptas, paraytas Perl kalba. VAP parsisiunčia Vilniaus autobusų / troleibusų parko tvarkaračius ir pateikia vartotojui WML, taigi pastaruosius tvarkaračius galima pamatyti mobiliojo telefono ekrane.
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This PERL script was used in the study by Marine et. al (2013)* to calculate average sequence read coverage of each predicted ORF within a phage genome. *See the following open-access publication for more detail: Marine, R., C. McCarren, V. Vorrasane, D. Nasko, E. Crowgey, S. W. Polson, K. E. Wommack. 2013. Caught in the middle with multiple displacement amplification: The myth of pooling for avoiding MDA bias in a metagenome.
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23
SpeedyQuant
Quantifies DNA, RNA or protein bands in agarose or acrylamid gels.
...When calculating the relative strength of each band (% of most prominent band) it takes the background noise into account. This leads to accurate and comparable results. Several options can be used to tune the detection process. Here we provide the source code of the program (Perl script) that can be run on any OS with Perl installed (e.g. the freely available Strawberry Perl). A Win-64bit executable is available at: www.foreach-bioinformatics.de -
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Yahoo Group Archiver was a command line utility to interact with Yahoo Groups. Currently we can download the messages(without the attachments), everything from the files section and all the images from the photo section along with their hierarchy on Yahoo Grab the latest code from SVN - since I have moved to a rolling release instead of versioned releases. https://sourceforge.net/p/grabyahoogroup/code/ [ALERT] The new neo interface has broken the script and I have not found any easy...
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parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. ...
