Search Results for "gnu science" - Page 73
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Showing 11014 open source projects for "gnu science"
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JNode is a Java New Operating system Design Effort. JNode is a simple to use and install Java operating system for personal use on modern devices. Any java application runs on it, fast and safe. See our homepage for additional information.
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Current Time Designator
Displays all time information... at no cost!
With this application you can know all, about current time! Day, month, year, Week day, clock (hours, minutes and seconds), time of execution of application (years, months, weeks, days, hours, minutes and seconds). -> This application has a miniscule consumption of resources. -> This application doesn't need any configuration just need to be executed. -
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Analyze My Genes
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time. -
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GeoCast
Multi-view camera description format for OpenGL visual computing
GeoCast is a data format that binds together camera information and multi-layer image sequences, such as RGBZ or RGBA representations. We use OpenEXR for image storage, and represent the camera position, rotation, and lens parameters as text files. -
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ncclamp is a command-line tool for NetCDF files that allows you to replace values in-place for a variable given the old value to be replaced, the new value, and a comparison operator. The change is applied across all of the variable's dimensions.
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pyMDMix
Molecular dynamics with aqueous-organic solvent mixtures
This python package aims to help people set up and analyze molecular dynamics simulations in aqueous-organic solvent mixtures. See D. Alvarez-Garcia et al. Journal of Medicinal Chemistry, 2014. -
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olego
OLego – short or long RNA-seq read mapping to discover exon junction
OLego is a program specifically designed for de novo spliced mapping of mRNA-seq reads. OLego adopts a seeding and extension scheme, and does not rely on a separate external mapper. It achieves high sensitivity of junction detection by using very small seeds (12-14 nt), efficiently mapped using Burrows-Wheeler transform (BWT) and FM-index. This also makes it particularly sensitive for discovering small exons. It is implemented in C++ with full support of multiple threading, to allow fast... -
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A Java interface and implementation for the W3C Web Ontology Language (OWL), used to represent Semantic Web ontologies. The API is focused towards OWL 2 and offers an interface to inference engines and validation functionality.
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Java implementation of John Platt's Sequential Minimal optimization algorithm. This is an efficent Support Vector Machine solution.
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PyML is an interactive object oriented framework for machine learning written in python. PyML focuses on kernel classifiers, providing tools for feature selection, model selection, and methods for assessing classifier performance.
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GSA-SNP is a gene set analysis software that can process SNP data as well as gene and haplotype data.
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Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
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Bifrozt
High interaction honeypot solution for Linux based systems
NOTICE: The format of this project has been changed from ISO to using ansible and has been moved to GitHub. Github link: https://github.com/Bifrozt/bifrozt-ansible -
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ArtificialFastqGenerator
Ouputs artificial FASTQ files derived from a reference genome.
ArtificialFastqGenerator takes the reference genome (in FASTA format) as input and outputs artificial FASTQ files in the Sanger format. It can accept Phred base quality scores from existing FASTQ files, and use them to simulate sequencing errors. Since the artificial FASTQs are derived from the reference genome, the reference genome provides a gold-standard for calling variants (Single Nucleotide Polymorphisms (SNPs) and insertions and deletions (indels)). This enables evaluation of a Next... -
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Projet sumtec
Nettoyage et préparation de corpus de transcriptions d'entretiens
Scripts réalisés dans le cadre du projet SUMTEC pour la préparation des corpus de transcription en vue d'une exploitation sur RQDA et IRAMUTEQ. http://www.msh-lorraine.fr/index.php?id=623 Le projet contient 3 programmes PERL. L'objectif consiste à récupérer des transcriptions d'entretien non structurées afin de les structurer sous la forme d'un arbre xml. L'intérêt consiste à pouvoir, in fine, identifier les tours de parole et séparer les discours des interviewés et des intervieweurs. -
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PortOpt
A portfolio-optimizer using Markowitz(1952) mean-variance model
PortOpt [Portfolio Optimizer] is a C++ program (with Python binding) implementing the Markowitz(1952) mean-variance model with agent's linear indifference curves toward risk in order to find the optimal assets portfolio under risk. You have to provide PortOpt (in text files or - if you use the api - using your own code) the variance/covariance matrix of the assets, their average returns and the agent risk preference. It returns the vector of assets' shares that composes the optimal... -
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PopED lite
Simple, Fast, Intuitive optimal design software for preclin PKPD study
In order to maximise model based understanding of pharmacokinetic-pharmacodynamic (PKPD) studies, it is essential to choose sensible dosages and sampling times for experiments. PopED lite can help you improve your experimental design by algorithmically searching through possible experimental designs and suggesting the optimal experimental design. The algorithm is based on mathematically sound optimal design theory; however, PopED lite is made for users without any background in optimal... -
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Various sketches and/or libraries for Arduino that people might find useful.
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**we moved to github** https://github.com/gimli-org/gimli Geophysical Inversion and Modeling Library
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TurnServer is a implementation of Traversal Using Relay around NAT (TURN) protocol. This protocol allows a client to obtain IP addresses and ports from such a relay.
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CAnaBIS stands for "Computer Analysis of Brain Image Statistics". Its aim is to provide a C++ library of file I/O and efficient computational routines for NifTI brain images.
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Takt
Text-based Music Programming Tools
Takt is a text-based language for describing note and chord sequences as well as algorithmic compositon rules with C-like syntax. This software package contains a REPL (read-eval-play loop) interpreter for Takt, a MIDI-file-to-Takt translator, and an Emacs interface program which enables note entry from a MIDI keyboard. -
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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This is the Sourceforge reposository of the EU project EFAA. The Experimental Functional Android Assistant (EFAA) project will contribute to the development of socially intelligent humanoid robots.
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The JTS Topology Suite is an API for modelling and manipulating 2-dimensional linear geometry. It provides numerous geometric predicates and functions. JTS conforms to the Simple Features Specification for SQL published by the Open GIS Consortium.
