Search Results for "reference" - Page 63
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Showing 2126 open source projects for "reference"
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Outgrown Windows Task Scheduler?Windows Task Scheduler wasn't built for complex, cross-platform automation. Get a free diagnostic that shows exactly where things are failing and provides remediation recommendations. Interactive HTML report delivered in minutes.
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AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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SOCS
SOCS is a SOLiD read mapper with bisulfite sequencing support.
SOCS performs ungapped alignment of SOLiD (color space) sequencing reads against reference sequences. Modes are available for detecting short sequence-space variants (such as SNPs) and for detecting unlimited numbers of bisulfite-induced nucleotide substitutions for 5mC methylation studies. -
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NGS data quality evaluation
Python tool to evaluate the quality of high-throughput sequencing data
ngsdataqeval is a Python tool to evaluate the quality of high-throughput sequencing data, used by Next Generation Sequencing. Unlike other tools that analyze raw data, this is designed to evaluate the quality of the processed reads after mapping to a reference genome. The evaluation is performed in a genomic region defined by the user, and it provides some statistics computed from the reads that map to that region (ie. a single gene). The program provides a graphical output embedded in an html file. The analysis contains the sequencing quality along the reads, the mapping quality distribution, the coverage of the defined region, the overall quality at each nucleotide position, and the distribution of the coverage as a function of the GC content in the reference genome. ... -
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DjDoom
Reference implementation for the Doom game engine.
DjDoom is a reference implementation for the original Doom game engine. The purpose of this project is to build a playable Doom engine from the original Linux source code with minimal changes necessary to build and run in a Windows environment. This was created as a learning tool for me and I'm publishing this so it can be a learning tool for others. -
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SciPlore MindMapping is based on FreeMind but extended with features for students & researchers. It integrates mind maps with reference and pdf management (BibTeX support & PDF Bookmark import). Keywords: Mind maps, Mind Mapping, MindMap, JabRef
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fastqz
FASTQ file compressor
fastqz is a compressor for the most common (Sanger format) FASTQ files produced by DNA sequencing machines. It may be used with a reference genome for better compression. -
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The CPE Reference Implementation is a freely available application that demonstrates the naming and matching schemes of the CPE specification.
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mathrefplugin
A plugin for JabRef
A plugin for JabRef. The plugin queries Zentralblatt MATH reference entries using the BibTeX format. -
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GeoPMS is a project based full paper management system to archive, search and manage scientific papers. GeoPMS has full text search, search by author, search by title and citation import functionality direct from the PDF header, PDF text or RIS. Reference list design can be selected for each project.
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A python-based calculator that uses the Sabine, Norris-Eyring and Fitzroy formulae to calculate the RT60 time of a room with given specifications. Material list from SAE Institute reference.
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Atera all-in-one platform IT management software with AI agentsAtera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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JFinisher
JFinisher is software for alignment, editing and manipulation DNA seqs
JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and ability to export results in the standard formats of the area. -
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Reference multiplatform implementation of the Cisco Dynamic Feedback Protocol (DFP), used in server farms to perform fine-grained load balancing. NOTE: you need to checkout from SVN, there are no releases yet.
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StateGen
Generate an executable state machine from a high level language.
This application may be used to generate a full-featured software state machine using a high-level description language. Several state machines can be placed into the same source file and they can reference one-another to create nested state machines. Any arbitrary code can be associated with any state transition. Inline code is supported. Any code may also be defined to be run before the start state is entered as well as after the end state is finished. Uses for this software include creating scanners and filters as well as user interfaces. ... -
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ETHNOS
ETHNOS - Expert Tribe in a Hybrid Network Operating System
The ETHNOS environment is composed of: 1) ETHNOS-6, a dedicated distributed real-time operating system (developed as an extension to Linux), from which the overall environment takes its name, supporting different high level representation, communication, and execution requirements, 2) a dedicated network protocol designed for both the single robot and the multi-robot environment, specifically designed for noisy wireless communication, 3) an object oriented Application Programming Interface (API) based on the C++ language (and a subset based on Java), 4) a set of additional development tools (a robot simulator, a Java-applet template, etc.). Check the official website for a Reference Manual. -
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bee
PHP / PDO / XSL / jQuery framework
PHP framework focused on MVC - Model View Controller, XSLT - Extensible Stylesheet Language Transformations, PDO - PHP Data Objects, jQuery - JavaScript Library, Event Driven Programming. Demo available on: http://phpbee.vlexofree.com username: john / password: beatles Class Reference: http://phpbee.vlexofree.com/html/ -
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MosaikImage
Mosaik Image
Program that makes one big image out of many small images. The user can select a reference image and folders containing the other images with a GUI. -
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A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns. * tbldesc: Summarize columns in file (e.g., proportion of character/numeric values, min/mean/median/max, missing values, correlation with a target column)...
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MMSDK
Managed Multimedia Software Development Kit
...It is implemented using Microsoft .NET framework 2.0, and is compatible with all managed languages like C#, Visual Basic .NET, C++/CLI (Managed C++), etc. Programmers will just have to add reference to the MMSDK.dll in their project and the classes can be used easily. The SDK classes are grouped into a single namespace, based on their functionality. The root namespace is MMSDK. All other namespaces are grouped under it. -
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Word Reference Java API
Java Library for www.wordreference.com API
Java Library for the www.wordreference.com API. Translates a term provided, as well as provides list of synonyms (English only as of 10/14/2011). If a 'Local Library' path is provided, results are stored locally for later use--this store is searched before searching www.wordreference.com (refer to the (c)wordreference.com terms of service on storing their data locally). NOTE: As of 10/14/2011, you must provide your own API key (register @... -
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regnann
Reverse Engineering Gene Network using ANN
...RegnANN makes no assumptions about the nature of the relationships between the variables, potentially capturing high-order and non linear dependencies between expression patterns. To compile the software you are required to install CUDA SDK for your platform. We provide a reference Makefile that should be good enough for standard installations (unix/32bits). See README file for further information The software is part of research work published online. To cite it: Grimaldi M, Visintainer R, Jurman G (2011) RegnANN: Reverse Engineering Gene Networks Using Artificial Neural Networks. PLoS ONE 6(12): e28646. -
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TBARMapper
Finds mutations of M. tuberculosis
It maps sequencing reads with MTB reference genome (H37Rv) using NCBI blast, and finds out mutation sites. -
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ArgooMap
A map-based discussion forum ("argumentation map")
ArgooMap is an online, map-based discussion forum, which allows participants to reference their contributions to geographic locations. Different versions of ArguMap and ArgooMap/Argoomap were developed by students supervised by Dr. Claus Rinner at Ryerson University (Toronto, Canada) with partial funding from the GEOIDE Network of Centres of Excellence and DAAD, the German Academic Exchange Service. Past and current developers at Ryerson and the University of Muenster include: - Carsten Keßler - Marius Austerschulte - Sepehr Mavedati - Sami Munshi - Matrica Joshi Alternative versions (not yet available here) were developed by: - Aaron Sani (Ryerson) - Soheil Boroushaki (Univ. of Western Ontario) - Ana Simao (University College London) The ArgooMap Sourceforge project page contains two implementations of the package, which diverged from a single older version, ArguMap. ... -
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Alignment of the assembled sequences to a reference genome is a common way to obtain a likely order for the contigs, though most of times the final decision is taken by the user. We present the jContigSort, a tool that sorts the genome contigs.
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This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted.
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FOSS Evaluation
FOSS Evaluation
The Foss Evaluation program will help facilitate the interaction between a researcher and the FOSS/HFOSS projects on the Internet in an easy to use interface to search and find a project based on given criteria. The main functions of the FOSS Evaluation program are to not only search for a project, but to also retrieve and display the following information, if available, for the project: project name, project description, lines of codes, number of commits, maturity of the project, number of... -
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The Dark Planet Development Platform (a.k.a. DPS or DP-squared), is a set of core APIs and reference implementations for developing applications for the EVE MMORPG.
