Search Results for "genetic algorithm java" - Page 6
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Showing 908 open source projects for "genetic algorithm java"
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OWL Machine Learning
Machine learning algorithm using OWL
Feature construction and selection are two key factors in the field of Machine Learning (ML). Usually, these are very time-consuming and complex tasks because the features have to be manually crafted. The features are aggregated, combined or split to create features from raw data. This project makes use of ontologies to automatically generate features for the ML algorithms. The features are generated by combining the concepts and relationships that are already in the knowledge base,... -
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JView is a command line client for MyWebProject SOAP Web Service. Usage: param 1: endpoint, param 2: remote folder, param 3: algorithm, param 4: modeParam, param 5: userName, param 6: password, param 7: outputFile Example: java -jar JView2.jar http://davidesestili.ddns.net:8080/MyWebProjectLogin/services/GenerateAndDownloadHashWSLogin /home/dsestili82/ SHA-512 no-subfolders davide davide /home/davide/Scaricati/mozilla.sha512 (Currently unavailable) Source code available on https://github.com/davidesestiliwork/JView
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EntOpt Layout
Relative entropy optimization network layout plugin
The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization of major protein complexes in protein-protein interaction and signalling networks, Bioinformatics 35(21):4490-4492 https://academic.oup.com/bioinformatics/article/35/21/4490/5475596 Our detailed Tutorial on the use of the plugin: https://suopte.com/entopt_2_1_tutorial_20200518.pdf A video about the version 2.1: http://suopte.com/entopt_2_1_tutorial_video.mp4 Don't hesitate to send any questions, comments or bug reports also to agg.bence {at} med.semmelweis-univ.hu. -
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A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
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This project is the cvs-home of very different projects. Look in the Forum to view short descriptions. Most recent (and actual) is "geneden", a genetic IA app with Swing GUI and...
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GenCodeGenerator
C++ class to generate biologically plausible genetic codes
...By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). See Appendix in Makukov & shCherbak (2017) for the description of the algorithm. The code requires Qt 5. -
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Elements of Programming Interviews
Method stubs and test cases for Elements of Programming Interviews
This repository contains method stubs and tests of the problems from Elements Of Programming Interviews by Adnan Aziz, Tsung-Hsien Lee, and Amit Prakash. This book is also available in Python and C++. This repository contains solutions to problems from the book "Elements of Programming Interviews," focusing on interview preparation and algorithm practice. -
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jalicanto
Traveling Salesman Problem "window time based" aproximate solver
Time based Traveling salesman problem solver. Using iterated local search algorithm, implements xkick perturbation Programmed in Java. A class to use the TSP Suite(Thomas Weise, Raymond Chiong, J ¨org L¨assig, Ke Tang, Shigeyoshi Tsutsui, Wenxiang Chen, Zbigniew Michalewicz, Xin Yao, Benchmarking Optimization Algorithms: An Open Source Framework for the Traveling Salesman Problem. 2014.),is implemented. -
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spectralHMM
A spectral method for inferring selection from time series data
***WARNING*** This software was migrated to: https://github.com/popgenmethods/spectralHMM Support and updates will only be available at this new address. This software implements the algorithms described in the following paper: Steinrücken, M., Bhaskar, A. and Song, Y.S. A novel spectral method for inferring general diploid selection from time series genetic data. Annals of Applied Statistics, Vol. 8, No. 4 (2014) 2203-2222 -
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Jade
Evolutionary Algorithms for Time-Dependent Optimization & Learning
A Java library of Genetic Algorithms, Artificial Immune Systems and Pittsburgh Classifier Systems meant to operate in time-dependent environments. -
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Swift AI
The Swift machine learning library
Swift AI is a high-performance deep learning library written entirely in Swift. We currently offer support for all Apple platforms, with Linux support coming soon. Swift AI includes a collection of common tools used for artificial intelligence and scientific applications. A flexible, fully-connected neural network with support for deep learning. Optimized specifically for Apple hardware, using advanced parallel processing techniques. We've created some example projects to demonstrate the... -
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GAKNN is a data mining software for gene annotation data. GAKNN is built with k- Nearest Neighbour algorithm optimized by the genetic algorithm. Gene annotation datasets saved under .csv or .arff formats with Gene Ontology or FunCat categorization can use GAKNN to predict gene functions.
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GA-tools
general genetic algorithms optimization fortran 95 routines
High level optimization routines in Fortran 95 for optimization problems using a genetic algorithm with elitism, steady-state-reproduction, dynamic operator scoring by merit, no-duplicates-in-population. Chromosome representation may be integer-array, real-array, permutation-array, character-array. Single objective and multi-objective maximization routines are present. Possible to incorporate own crossover and mutation operators exclusively or in addition to standard operators that are included by default. ... -
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DES-Rotem
DES attempt to crack code with 3 rounds
This Java project is an attempt to crack the key in a DES encryption algorithm. The plaintext and the cyphertext are known. The purpose is to crack the 64-bit key with 3 rounds instead of 16. This project checks all 2^64 possible keys. Therefore, it takes a long time to find the correct key. -
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Algorithm Database
Efficient Algorithms implemented in Java
The Aim of this project is to provide a collection of reusable Algorithms which can be used effectively in different scenarios. Algorithm implementations are in Java. Objective here is to implement algorithms which should be more efficient than the JDK implementation and also to create a platform for the researchers who works on Data Mining, Encryption algorithms, ect.. to collaborate and contribute to this project. -
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jMetal is an object-oriented Java-based framework for solving multi-objective optimization problems with metaheuristics.
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MCU Media Server
SIP Video Multiconference Media Server with WebRTC support.
REPOSITORY MOVED TO GITHUB!! https://github.com/medooze/media-server Video Multiconference Media Server with WebRTC support. Provide Multiconference and video broadcasting services to any SIP service. Supports VP8, H264, MP4V-ES, H263 and H263P, continuous presence, RTMP flash broadcasting, adhoc conferences, load balancing and administrative WEB interface. JSR309 driver implementation under development. . -
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OpenRS
road noise auralization
This software can perform auralizations of a car pass-by. The auralization algorithm is based on Nord2000 and ISO9313. Correction for winds is not implemented. You can export the sounds to a wave-file and save your project. The installer works for for windows. If you want to run the software on a Mac or Linux, you might have to compile the code. -
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SmartRoot
Semi-automated root image analysis software
SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according to specific research requirements. SmartRoot is an operating system independent freeware based on ImageJ and uses cross-platform standards (XML, SQL, Java) for communication with data analysis softwares. ... -
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Xamp
This is Xamp, a secure and platform independend media player.
This is Xamp, the next generation of a skinnable and platform independent media player which based on the Doppio media framework: https://sourceforge.net/projects/doppio. The player supports various pluggable video and audio formats. Xamp is primarily intend to run as a native executable but can also run as a Java player version working with Java 1.1 VM or above. To ensure the best user experience, the Java version of Xamp doesn't use the Java Media Framework, the high level part... -
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MicroGP
A multi-purpose extensible self-adaptive evolutionary algorithm
MicroGP (µGP, ugp) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm. ⚠️ A new version is available on https://github.com/squillero/microgp4 -
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VoltMR
Pure java NGS mapping soft run on Hadoop 2.0
...Currently, VoltMR take fastq as a input and output bam/ADAM format. For DNA mapping, GATK compatible realignment/recalbration followed after mapping. For RNA mapping, splice aware algorithm is implemented. Volt is open source, released as "LGPLv3" -
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This package implements the algorithm bagging markov random field method with c++ together with Java interface. http://nar.oxfordjournals.org/content/41/2/e42.long Cytoscape App: BMRF-Net-CytoscapeV1.0.tar.gz https://sourceforge.net/projects/bmrfcjava/files/BMRF-Net%20Package/BMRF-Net-CytoscapeV1.0.tar.gz/download Source code and standalone version: BMRF-Net-standalone.tar.gz https://sourceforge.net/projects/bmrfcjava/files/BMRF-Net%20Package/BMRF-Net-standaloneV1.1.tar.gz/download BMRF-Net-standalone V1.1: fix issues in analyzing large scale network
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tsp-problem-ga-aco-comparisson
Genetic Algorithm and Ant Colony to solve the TSP problem
This project compares the classical implementation of Genetic Algorithm and Ant Colony Optimization, to solve a TSP problem. It's possible to define the number of cities to visit , and also interactively create new cities to visit in a 2D spatial panel. A total distance is given for AG and ACO solution at end. -
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MicroZip
Create,extract and encrypt ZIP,GZIP,TAR,BZIP2,TAZ files on Java mobile
MicroZip is a powerful file compression and encryption utility for mobile phones which allows you to create and extract compressed archives in multiple formats and encrypt sensitive information with powerful AES-256 encryption. MicroZip can create and extract ZIP,TAR,TGZ,TBZ2 archives and extract many other formats as JAR,GZ,BZ2,TBZ,WAR,BZIP2,GZIP,Z,TAZ,CBZ etc. MicroZip allows you to extract selected files without extracting the whole ZIP archive. MicroZip also supports encrypted ZIP...
