Search Results for "reference" - Page 53
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Showing 2124 open source projects for "reference"
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Find Hidden Risks in Windows Task SchedulerWindows Task Scheduler might be hiding critical failures. Download the free JAMS diagnostic tool to uncover problems before they impact production—get a color-coded risk report with clear remediation steps in minutes.
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icfs
Indexed cloud file system
icfs provides a way for mapping multiple URLs, referencing various web-enabled artifacts, into a single file system presentation under Linux. URLs can reference static pages, REST calls, or web objects in an object store. -
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MARAGAP
MARAGAP - Modular Approach to Reference Assisted Genome Assembly Pi...
This paper presents `MARAGAP', a reference assisted genome assembly pipeline. MARAGAP uses the principle of Minimum Description Length to determine the optimal reference sequence for the assembly. The optimal reference sequence is used as a template to infer inversions, insertions, deletions and SNPs in the target genome. MARAGAP uses an algorithmic approach to detect and correct inversions and deletions, a De-Bruijn graph based approach to infer the insertions, an affine-match affine-gap local alignment tool to estimate the locations of those insertions and a Bayesian estimation framework for SNPs. -
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GObject reference counting debugger. A tool to help track down hard to find reference counting bugs in GObject, GTK and Gnome programs.
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Bayesian Estimated Core Genome
A pipeline for estimating the core genome of a set of genome sequences
...As well as calculating the estimated core genome, tools are also provided for the calculation of median pairwise distances for alignments generated by Genome Comparator for each gene based on the reference genome. Finally, there is a tool for generating the necessary files to create the genome diagrams seen in van Tonder et al. [2] using Circos [3]. 1. Jolley KA, Maiden MC. BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 2010, 11:595. 2. van Tonder AJ, Mistry S, et al.Defining the estimated core genome of bacterial populations using a Bayesian decision model. ... -
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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grasp-release
GRASP: Guided Reference-based Assembly of Short Peptides
GRASP is a gene annotation tool for metagenomic studies. GRASP assembles the fragmented short-peptides, which are called from the NGS reads, and aligns the assembled contigs to the query reference protein. GRASP achieves much higher sensitivity than BLASTP for gene annotation purpose. If you found GRASP useful for your projects, please cite: Zhong, C., Yang, Y., and Yooseph, S. GRASP: Guided Reference-based Assembly for Short Peptides, Manuscript in preparation -
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BTS Pentesting Lab
BTS Pentesting Lab - a deliberately vulnerable Web application
...Currently, the app contains the following types of vulnerabilities: *SQL Injection *XSS(includes Flash Based xss) *CSRF *Clickjacking *SSRF *File Inclusion * Code Execution *Insecure Direct Object Reference *Unrestricted File Upload vulnerability *Open URL Redirection *Server Side Includes(SSI) Injection and more... Java version of this application can be found here: https://sourceforge.net/p/javavulnerablelab/ -
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HBSAnalyzer
Aligner and methylation caller for hairpin bisulfite sequencing data
HBS Analyzer is a methylation calling tool for hairpin-bisulfite sequencing data. HBS Analyzer can accept raw hairpin-bisulfite sequencing data in FASTA or FASTQ format, align the paired end reads to the reference genome and call methylation. Given the double stranded nature of the data that is used, HBS analyzer can identify errors caused by PCR and sequencing along with identifying hemi-methylated sites. This error information is also considered while making the methylation call and hence methylation sites introduced by SNPs are also identified along with the known methylation sites in the genome. -
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HBSAnalyzer
Aligner and methylation caller for hairpin bisulfite sequencing data
HBS Analyzer is a methylation calling tool for hairpin-bisulfite sequencing data. HBS Analyzer can accept raw hairpin-bisulfite sequencing data in FASTA or FASTQ format, align the paired end reads to the reference genome and call methylation. Given the double stranded nature of the data that is used, HBS analyzer can identify errors caused by PCR and sequencing along with identifying hemi-methylated sites. This error information is also considered while making the methylation call and hence methylation sites introduced by SNPs are also identified along with the known methylation sites in the genome. -
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bengaliwordnet
A Bengali Wordnet for all purpose usage.
Bengali WordNet is a lexical database for the Bengali language.It incorporates various Synsets which are categorised into parts of speech and provides definition and gloss for every synset. It can be used as a reference for everyday usage of the language, as well as, in various language processing tasks, i.e NLP,MT etc. -
Atera all-in-one platform IT management software with AI agentsAtera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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Pyringe
Debugger capable of attaching to and injecting code into python
...This is invaluable for post-mortem diagnosis of production daemons where reproducing a bug in a dev shell is impractical. pyringe can inject arbitrary Python into the target process, enabling on-the-spot logging, state dumps, or gentle patching to keep a system limping along while you gather evidence. It’s also useful for forensic snapshots: enumerate objects of a certain type, find reference cycles, or measure memory pressure without pre-instrumentation. While powerful, it’s designed for careful, auditable use—showing exactly what code runs and where—so teams can regain visibility when black-box processes go sideways. -
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dnarand
dnarand is a highly customizable DNA sequences writer
...I started writing it for learning the basics of programming and Python language, using it as a gym for the language features that I wanted to learn. It turned out to be a highly customizable DNA sequences writer: it can be used to produce random sequences to be used as reference to test a pattern of choice against the appearance of random patterns, or to look at the features of the open reading frames that spontaneously pop up. Plus, it's possible to tell dnarand which is our favorite GC ratio, so that it can simulate AT-rich or GC-rich genomes, and choose our favorite genetic code from all available Ncbi's ones. ... -
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EditWith
A collection of Windows Explorer shell extensions for text editors.
...This makes it easier to use large or multiple monitors for editing different groups of files. Supports 32-bit and 64-bit Windows XP, Windows Vista, Windows 7 and Windows 8. Also serves as a reference for various programming techniques that don't have many examples ... Simple COM in C++ with no MFC/ATL, DLL self-registration, using ARGB icons in GDI+, creating Windows drag-and-drop messages, building with the Windows WDK to link to MSVCRT.DLL. -
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macOS Setup Guide
Installing Development environment on macOS
This guide covers the basics of setting up a development environment on a new Mac. Whether you are an experienced programmer or not, this guide is intended for everyone to use as a reference for setting up your environment or installing languages/libraries. Some environments we will set up are Node (JavaScript), Python, C++ and Ruby. Even if you don't program in all of them, they are useful to have as many command-line tools rely on them. We'll also show you some useful daily use applications. The first thing you should do is update your system. ... -
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The MaxParser is written in c++ and can parse with first, second, third and fourth order projective Graph-based Dependency parsing algorithm. The project is the new version of the project "Max-MSTParser". If you want to use this software for research, please reference this web address in your papers
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binhack32/64
A Sega Dreamcast "binhack" utility clone.
A clone of the "binhack" program made by Echelon used to hack LBA references in Sega Dreamcast Katana executables. Some features are added on top of the original ones; namely patching the bootsector to enable the VGA flag and setting the OS flag to 0 if a "bincon"-ed binary (boot.bin) is detected. The purpose of this project is to replace the original Echelon's "binhack" utility on systems that don't support 16-bits x86 binaries (e.g. Windows 7 x64). -
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tripfix - travel internet booking engine
IBE/internet booking engine/webportal for tour operators/travel agents
...One man-year’s worth of work is already included in the software – not to mention a great deal of experience from our other travel-based software projects (f.e. snowtrex.com). A reference project “cruise finder” (http://www.kreuzfahrt-finder.net) is currently running, and it can be extended to many other booking items (accommodations, flights, rental cars, ...). Among others, tripfix Booking Engine uses the following components: – PHP 5.3.2 – Zend Framework 1.11.5 – mongoDB 2.4.8 – smarty Template System 3.0.7 – jquery 1.9.2 You can get a free admin access for tripfix test-environment under http://tripfix.elpix.net/tripfix-admin-access. ... -
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The reference value is nothing more than a set of data bases. The first scenario has the structure and the generated data for the specific benchmark, the second is its structure and data obtained from an actual application.
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Inline fortran functions
Fortran emulation of Matlab inline functions
...A expression is an uniform way to work with several data types: constants, interpolation tables, formulas and precompiled functions. Finally, it is possible to work with "referenced expressions", that is, arrays of expressions associated to reference numbers. -
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Heartbleed
A checker (site and tool) for CVE-2014-0160
...The project illustrates how a malformed heartbeat request could coax vulnerable servers into leaking memory contents, including potentially sensitive data. Because it’s small and self-contained, it’s often used as a reference to understand the vulnerability mechanics without wading through large codebases. The repo also serves as a historical snapshot of a watershed moment in modern Internet security and the practical lessons it forced the industry to learn. Developers and security engineers alike can study it to better appreciate protocol hardening, input validation, and defense-in-depth strategies. -
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MSM's ToolBox
Set of different opensource tools for Win32
This is my personal set of old unfinished and deprecated win32 tools held here for reference only. No binaries included. Code is completely unclean and unstable. Use or explore it at your own risk! -
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TheUnixLinuxHowTo
This will provide a HowTo Document for Unix & Linux users
We are trying to come up with a comprehensive document that Linux Administrators and Linux and Java Developers can use .This has solutions to many problems , it also provides a reference document and a section for developers -
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Pune Local Finder
Finds Pune Lonavala Local Time Quickly
...Here is The solution After working hard for a week Finally I developed new Android application to find local timing very quickly. All you nees to do is just select source and destination with reference time of 1. Current Time 2. Manual Time 3. And press find local time... 4. Use arrows to view next and previous local time 5. You can also view time remaining for local -
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FLAC Decoder/Encoder
Hardware FLAC Encoder / Decoder
...Digital audio compressed by FLAC's algorithm can typically be reduced to 50–60% of its original size and decompressed to an identical copy of the original audio data. FLAC is an open format with royalty-free licensing and a reference implementation which is free software. This project is High Performance, Low Power and High Quality FLAC Encoder and Decoder on HDL Code for FPGAs or ASICs synthesis. -
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LPJ-LMfire
The LPJ-LMfire Dynamic Global Vegetation Model
This is the LPJ-LMfire Dynamic Global Vegetation Model described in the following reference: Pfeiffer, M., A. Spessa, and J. O. Kaplan (2013), A model for global biomass burning in preindustrial time: LPJ-LMfire (v1.0), Geosci. Model Dev., 6(3), 643-685. http://www.geosci-model-dev.net/6/643/2013/gmd-6-643-2013.html The model code is mostly written in modern Fortran with a few legacy Fortran77 routines. -
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...The code here on SourceForge is frozen !!Please follow us at http://libical.github.io/libical The Free Association project maintains libical, an open source reference implementation of the icalendar data type and serialization format. libical is used in dozens of calendaring and scheduling products.
