Search Results for "structural analysis spreadsheet" - Page 5
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Showing 168 open source projects for "structural analysis spreadsheet"
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PyInteraph
analysis of interaction networks in structural ensembles of proteins
...These graphs can be thoroughly analyzed using included network analysis tools, which are able to point out the most important features of the network for the discovery of paths of structural communication in proteins. The tool works best together with the xPyder PyMOL plugin ( http://xpyder.sourceforge.net ), which allows for further analysis and easily understandable representation of the calculated networks and graphs. -
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OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability analysis and elements of experimental design.
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New advanced technologies including the next-generation DNA, and information technology have significantly improved our capacities of developing biological knowledge and changing our understanding of diseases, phenotype and genotype. In this post-genomic context, protein sequence analysis is a key issue to better understand the evolutionary, structural and functional aspects. NeoPipe is a tool of analyzing a protein family , which consists of 8 steps concerning the search for homologous sequences in multiple databases (protein, 3D structures,…) and functional and structural annotations of clustered multiple alignment of complete sequences (MACS). ...
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BoneSlicer
Experimental G-Code-Generator for variable density infill in FFF parts
BoneSlicer is an experimental G-Code-Generator written in Java that allows creating load-adapted infill for 3D printed (FFF) parts, inspired by the adaptive structures of trabecular bone tissue. It uses a simple structural Finite Element Analysis to determine the distribution of mechanical stress within the part and offers tools to generate an infill structure consisting of multiple subareas of varying infill density. Subdivision of the infill area can be based on a broad spectrum of FEA result parameters. BoneSlicer relies on the Open Source software GMesh and Calculix for meshing and FEA analysis. ... -
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QUDeX-MS
Hydrogen/deuterium exchange estimation for isotopic fine structure MS
Hydrogen-deuterium exchange coupled to mass spectrometry permits analysis of structural dynamics, stability, and molecular interactions of proteins. Resolving isotopic fine structure during mass spectrometry has been recently demonstrated to allow direct detection and quantification of deuterium incorporation distinct from peaks corresponding to non-deuterium incorporated natural abundance heavy isotopomers. -
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
...PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level. -
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piv_clustering
structural clustering of atomic trajectories based on PIV
...Alternatively, also the SPRINT topological coordinates can be employed, that are particularly suited for nanostructures. The output is a partitioning of the trajectory into a few structural clusters (i.e., sets of frames), allowing for simpler analysis and visualization. Please read and cite Gallet & Pietrucci, J. Chem. Phys. 139, 074101 (2013) -
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ExafsArchitect
A tool kit for EXAFS/XAS/XES Analysis
ExafsArchitect helps you to create molecular models (or grids of molecular models) that allows you, by systematically varying the coordinates of ligands relevant to Chemistry and biology, to easily calculate and evaluate structural effects in EXAFS/XAS and XES spectra using FEFF and/or ORCA. -
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SPADE
A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. -
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TikzCivilEng
Useful set of Tikz drawings for Civil Engineers
This project aims to build a big set of Tikz Drawing, that are useful for the creation of Reports in Civil Engineering. The main topics are: Structural Analysis and Geomechanics at the moment, since those are the kind of drawing I need at the time (I am still studying). -
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Monastic University
Software for managing Admissions, Withdrawals, Marks in Monastic Inst.
This software will help in the management of Admissions / Withdrawals of Staffs & Students & also processing of Exam Marks of all Monastic Universities. Designed with goals of Simplicity & packaged with all necessary open source tools to get you into action, straightaway. Just download the file given above, then double click to extract it to a Disk Partition, with lots of free space, & then right-click files with names starting with 1 to 8 to run them as administrator, to install the... -
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DNAA is the DNA analysis package, for analyzing next-generation post-alignment whole genome resequencing data. Specifically, DNAA is able to find structural variation, SNP and indel variants, as well as evaluating the mapping and data quality.
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ctqa-cp
Automatic analysis of CT images of the CatPhan600/504 phantom
Hosted at google code, for latest version please go to: https://code.google.com/p/ctqa-cp/ Automatic image quality analysis of computed tomography images of the CatPhan? phantom. CTQA is a software package to aid in quality assurance of image quality for CT scanners. The software currently only supports analysis of CT-images of the CatPhan600? phantom. Other phantoms may be supported upon request. The purpose of CTQA-cp is twofold: 1) To handle and analyze image sets consisting of a few thousand images that is commonly obtained from image quality assurance protocols on CT scanners. 2) Easily provide results that can be copied to your favorite word or spreadsheet processor, or be saved to disk. -
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jFox Journal
Trading journal for Currency,Stock,Commodity traders
jFox Trading Journal is software developed mainly for currency traders,it provides advanced data analysis to improve traders ability to reach higher profits and eliminate losses.jFox keeps your data in one place.To access or modify any of your data jFox provide simple user friendly GUI.By generating graphs and statistics automaticly,user only needs to provide his data to have full overview over his trades and trading performance. -
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Component for structural analysis (graph-based concept and entity linking, segmentation and alignment of comparable texts)
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SecStAnT
Secondary Structure Analysis Tool for data selection and statistics
SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions. SecStAnT is able to 1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives. 2. Build Data-sets at different levels of resolution (all atoms, only backbone, only... -
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SymSAP
SymSAP - A Symbolic Structural Analysis Program
SymSAP is a little program, written in Maxima language, to perform symbolic matrix analysis of structures. SymSAP aims to become a powerful didactic tool to help students learn structural analysis. -
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Myrtle
A simple programmable spreadsheet for learning statistics.
Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. -
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently... -
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pyTruss
Simple 3D Structural Analysis
Basic 3D structural analysis in python. GUI allows building simple 3D shapes, applying static loads and monitoring dynamic load on beams. Based on OpenGL and ODE. -
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Spreadsheet Template for Structural Engineering (FEA Analysis for beams, trusses, 2D-frames). It makes possible to create your own parametric models.Templates for engineering calculation (fatigue, concrete plates, etc)
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Technical analysis library with indicators like ADX, MACD, RSI, Stochastic, TRIX... includes also candlestick pattern recognition. Useful for trading application developpers using either Excel, .NET, Mono, Java, Perl or C/C++.
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TrackXY
Track & log x & y displacement, in realtime, of object in webcam
...I released TrackXY to reduce barriers to entry to science. Planned features include versions for each platform, a GUI, comprehensive data management, and data analysis tools. To analyze motion in /recorded/ video (not real-time), you may prefer something like PhysMo, also a SourceForge project. -
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VidSync is a scientific video analysis program for both 2-D event logging and 3-D measurement applications.
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OFR Analysis Tool
For the analysis of output data from the OFR method
The OFR method is a type of steered molecular dynamics method for determining potentials of mean force (PMF) (Phys. Rev. E, 2011, 83: 021114) and local diffusion coefficients, D(z) (Phys. Rev. E, 2012, 86: 036707). OFR-AT is a fast and convenient program for analyzing large output data files from the OFR method, and returns the information necessary to quickly and easily calculate the PMF and D(z) in a spreadsheet. The software is described in detail in the following article: J. Comp....
